View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20261_high_44 (Length: 251)

Name: NF20261_high_44
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20261_high_44
NF20261_high_44
[»] chr8 (12 HSPs)
chr8 (102-244)||(32898424-32898566)
chr8 (102-244)||(10407563-10407705)
chr8 (102-244)||(35177397-35177539)
chr8 (102-219)||(35178808-35178925)
chr8 (96-244)||(1952949-1953096)
chr8 (102-199)||(41754000-41754097)
chr8 (97-208)||(41754810-41754920)
chr8 (119-208)||(45476181-45476270)
chr8 (137-208)||(5965457-5965528)
chr8 (97-207)||(30134563-30134673)
chr8 (108-205)||(5738041-5738138)
chr8 (152-208)||(9625242-9625298)
[»] chr5 (25 HSPs)
chr5 (6-134)||(14880879-14881007)
chr5 (102-219)||(8074453-8074570)
chr5 (102-244)||(4592863-4593005)
chr5 (97-208)||(2464666-2464777)
chr5 (102-242)||(40612640-40612780)
chr5 (102-219)||(546040-546156)
chr5 (96-208)||(28591129-28591241)
chr5 (97-208)||(18004635-18004746)
chr5 (97-219)||(2466778-2466900)
chr5 (108-194)||(18400198-18400284)
chr5 (127-208)||(19182977-19183058)
chr5 (102-207)||(21069291-21069396)
chr5 (97-208)||(9538064-9538175)
chr5 (125-208)||(19186235-19186318)
chr5 (125-208)||(32640313-32640396)
chr5 (163-213)||(14881010-14881060)
chr5 (120-207)||(25590451-25590537)
chr5 (110-208)||(9537033-9537130)
chr5 (137-200)||(544685-544748)
chr5 (137-207)||(32641742-32641812)
chr5 (136-208)||(16611764-16611836)
chr5 (160-244)||(8075812-8075896)
chr5 (152-205)||(4594118-4594170)
chr5 (161-205)||(13483174-13483218)
chr5 (108-208)||(16979000-16979100)
[»] chr7 (29 HSPs)
chr7 (97-244)||(43457454-43457601)
chr7 (96-244)||(35729065-35729213)
chr7 (102-208)||(48646051-48646157)
chr7 (102-208)||(48777258-48777364)
chr7 (110-244)||(10899052-10899186)
chr7 (108-244)||(35727707-35727842)
chr7 (93-244)||(7259663-7259814)
chr7 (102-208)||(30925023-30925129)
chr7 (102-204)||(44333141-44333243)
chr7 (102-208)||(44334464-44334570)
chr7 (102-244)||(7258277-7258419)
chr7 (97-242)||(48647424-48647569)
chr7 (97-208)||(45583681-45583792)
chr7 (98-208)||(12223714-12223824)
chr7 (102-207)||(46286505-46286610)
chr7 (97-208)||(8375598-8375709)
chr7 (102-208)||(48788687-48788793)
chr7 (102-207)||(42477383-42477487)
chr7 (112-208)||(8374926-8375022)
chr7 (152-219)||(13578325-13578391)
chr7 (153-244)||(45584475-45584566)
chr7 (108-208)||(39708111-39708211)
chr7 (153-208)||(44530626-44530681)
chr7 (102-207)||(8048800-8048905)
chr7 (158-219)||(33607627-33607688)
chr7 (98-200)||(21062815-21062917)
chr7 (140-219)||(44529068-44529147)
chr7 (154-208)||(32793225-32793279)
chr7 (108-208)||(19433949-19434049)
[»] chr2 (22 HSPs)
chr2 (95-244)||(17330209-17330358)
chr2 (102-208)||(31091542-31091648)
chr2 (102-208)||(32766254-32766360)
chr2 (102-219)||(31090166-31090283)
chr2 (102-207)||(32764940-32765045)
chr2 (102-244)||(2910102-2910244)
chr2 (102-244)||(7073641-7073783)
chr2 (142-219)||(14704048-14704125)
chr2 (108-208)||(24459461-24459561)
chr2 (102-208)||(24458062-24458168)
chr2 (103-208)||(34037688-34037793)
chr2 (108-242)||(40000315-40000449)
chr2 (102-208)||(39015007-39015113)
chr2 (125-208)||(17466843-17466926)
chr2 (102-208)||(2911506-2911612)
chr2 (102-203)||(5915012-5915113)
chr2 (102-208)||(39016398-39016502)
chr2 (108-219)||(34582674-34582785)
chr2 (109-208)||(38985004-38985103)
chr2 (160-208)||(21733786-21733834)
chr2 (143-218)||(17466084-17466159)
chr2 (108-208)||(38853763-38853863)
[»] chr3 (31 HSPs)
chr3 (102-219)||(17701923-17702040)
chr3 (102-208)||(2592022-2592128)
chr3 (97-219)||(17700515-17700637)
chr3 (102-219)||(55388075-55388192)
chr3 (102-242)||(2591629-2591769)
chr3 (102-219)||(36278954-36279071)
chr3 (102-208)||(48572987-48573093)
chr3 (102-243)||(52318297-52318438)
chr3 (97-244)||(52316976-52317123)
chr3 (131-208)||(11773066-11773143)
chr3 (102-208)||(48808366-48808474)
chr3 (108-208)||(45600954-45601053)
chr3 (97-207)||(34263802-34263912)
chr3 (102-208)||(55389484-55389590)
chr3 (108-208)||(33428450-33428550)
chr3 (139-219)||(36280321-36280401)
chr3 (144-208)||(48574474-48574538)
chr3 (109-208)||(20464078-20464177)
chr3 (108-219)||(47118055-47118166)
chr3 (102-208)||(19114535-19114641)
chr3 (136-208)||(53959115-53959187)
chr3 (97-195)||(53957672-53957769)
chr3 (108-208)||(47075366-47075466)
chr3 (103-244)||(50753820-50753961)
chr3 (102-208)||(19115162-19115267)
chr3 (102-175)||(19331110-19331183)
chr3 (139-208)||(33427791-33427859)
chr3 (122-199)||(47427882-47427959)
chr3 (137-208)||(49261552-49261620)
chr3 (139-207)||(3671077-3671145)
chr3 (180-208)||(48809669-48809697)
[»] chr1 (20 HSPs)
chr1 (96-244)||(32665749-32665897)
chr1 (102-244)||(9339648-9339790)
chr1 (102-219)||(7945558-7945675)
chr1 (97-242)||(10332983-10333128)
chr1 (114-208)||(7944169-7944263)
chr1 (102-208)||(10333201-10333307)
chr1 (123-208)||(9341040-9341125)
chr1 (97-244)||(52439476-52439619)
chr1 (102-208)||(52440574-52440680)
chr1 (95-208)||(5782409-5782522)
chr1 (127-208)||(5783124-5783205)
chr1 (102-207)||(6612421-6612526)
chr1 (152-208)||(6613994-6614050)
chr1 (152-208)||(22856732-22856788)
chr1 (125-207)||(534574-534655)
chr1 (139-208)||(3117688-3117757)
chr1 (127-208)||(11060799-11060880)
chr1 (147-208)||(25037925-25037986)
chr1 (147-208)||(25043137-25043198)
chr1 (110-202)||(44019996-44020088)
[»] scaffold0034 (1 HSPs)
scaffold0034 (102-208)||(116057-116163)
[»] chr6 (4 HSPs)
chr6 (102-208)||(30748001-30748107)
chr6 (108-207)||(31218963-31219062)
chr6 (108-208)||(31219175-31219275)
chr6 (96-208)||(23507945-23508056)
[»] chr4 (19 HSPs)
chr4 (102-244)||(42278051-42278193)
chr4 (102-208)||(47874566-47874672)
chr4 (108-208)||(53771064-53771164)
chr4 (102-208)||(47878499-47878605)
chr4 (93-206)||(31844715-31844828)
chr4 (103-208)||(26172957-26173062)
chr4 (125-207)||(54574450-54574532)
chr4 (136-242)||(4701801-4701907)
chr4 (108-219)||(48740024-48740135)
chr4 (108-208)||(4703232-4703332)
chr4 (152-208)||(26170692-26170748)
chr4 (108-204)||(53770341-53770437)
chr4 (110-208)||(39868932-39869028)
chr4 (102-205)||(39870692-39870795)
chr4 (102-181)||(42391930-42392009)
chr4 (132-208)||(2786253-2786329)
chr4 (160-208)||(19050298-19050346)
chr4 (147-206)||(54574822-54574881)
chr4 (161-244)||(50694810-50694893)
[»] scaffold0039 (2 HSPs)
scaffold0039 (103-205)||(74331-74433)
scaffold0039 (102-208)||(79075-79181)
[»] scaffold0767 (1 HSPs)
scaffold0767 (152-208)||(5651-5707)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 32898566 - 32898424
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32898566 aaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttatc 32898467  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  32898466 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 10407705 - 10407563
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  10407705 aaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtccataactttgcacttccgttatc 10407606  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    ||||||| ||||||||||       ||||||||||||||||||    
T  10407605 actttagttcctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 35177397 - 35177539
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||| |||||||||| |||||||| ||| ||||||||||||||| |||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  35177397 aaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatc 35177496  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  35177497 actttagtccctgacgttaaaataatctgttaagtgatgatgt 35177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 35178925 - 35178808
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| |||||||| ||||||  || |||||| || ||||| ||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  35178925 aaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgttatc 35178826  T
Q  202 actttagatcctgacgtt 219  Q
    |||||||  |||||||||    
T  35178825 actttagtccctgacgtt 35178808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 244
Target Start/End: Complemental strand, 1953096 - 1952949
Alignment:
Q  96 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 195  Q
    ||||| ||||| ||||||||||||||||||||||| |||  ||||| |||| ||  ||||| ||||||| | |||||||||||  |||||||| ||||||    
T  1953096 aagagtaaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtctatgactctgtacttcc 1952998  T
Q  196 gttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||||||||   ||||||||       ||||||||||||||||||    
T  1952997 gttatcactttagtctctgacgttaaataaatctgttaagtgatgatgt 1952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 41754000 - 41754097
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgtta 199  Q
    ||||| ||||||||||||||| ||||||| ||  ||||||||||||||| ||||| ||||||||| | ||| |||||||||||||| ||||| |||||    
T  41754000 aaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgactctacactttcgtta 41754097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 41754920 - 41754810
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| |||||||| ||| |||||||||| ||| ||||||||||| ||  ||||| ||||||||| ||||| |||| ||||||||| ||||||||    
T  41754920 agagcaaatagtcactttaatcc-tgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccg 41754822  T
Q  197 ttatcactttag 208  Q
    |||| |||||||    
T  41754821 ttattactttag 41754810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 45476181 - 45476270
Alignment:
Q  119 cctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||||| || ||| |||| | | |||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  45476181 cctgattcttcatctcgctgttagaaaggtccatgattcagaattaaatacaaataagtctctgactctgcacttctgttatcactttag 45476270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 5965528 - 5965457
Alignment:
Q  137 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||| | |||| ||||| ||||||||| ||||| |||||  ||||||||||||||||||||||||||||    
T  5965528 tgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttag 5965457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 30134563 - 30134673
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| |||||||||||||||||| | | |||||| ||| |||||||| ||||||   ||| | ||||||| ||||| ||||   |||||||||||||| |    
T  30134563 agagcaaataatcactttagtccttaactctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagtgtgtgactctgcacttctg 30134662  T
Q  197 ttatcacttta 207  Q
    |||||||||||    
T  30134663 ttatcacttta 30134673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 5738138 - 5738041
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactt 205  Q
    |||||||||| ||||| | ||||  ||  ||| |||||||||||||||| | ||||||| ||||| ||||   |||||||| ||||||||||||||||    
T  5738138 tcactttagttcctgactttgcatatcgttgtgacataggtccatgactcaagattaaatacaaagaagttattgactctgtacttccgttatcactt 5738041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 9625242 - 9625298
Alignment:
Q  152 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||||||||||||||||  ||| | ||| | ||||||||| ||||||||||||    
T  9625242 tgacttaggattaaacacaaagtagtacttgaatatgcacttccattatcactttag 9625298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 14880879 - 14881007
Alignment:
Q  6 tcatctatagttttatccgttcgctttgagagattaatctctacagttgcacaaatatgatatcggttnnnnnnntgcacataattcttgaagagaaaat 105  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||||||||||||| ||||    
T  14880879 tcatctatagttttatccattcgctttgagagattaatctctacagttgcacaaatatgataccggttaaaaaaatgcacataattcttgaagagcaaat 14880978  T
Q  106 aatcactttagtccctgattctgcaactc 134  Q
    |||||||||||||||||||||||||||||    
T  14880979 aatcactttagtccctgattctgcaactc 14881007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 8074453 - 8074570
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||||||| |||| ||| |||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 8074552  T
Q  202 actttagatcctgacgtt 219  Q
    ||||||| ||||||||||    
T  8074553 actttagttcctgacgtt 8074570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 4592863 - 4593005
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||||||| || | ||| |||||||||| |||| ||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 4592962  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  4592963 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 2464666 - 2464777
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| ||||||||||| ||||||||||| ||| |||||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||| ||    
T  2464666 agagcaaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcacttacg 2464765  T
Q  197 ttatcactttag 208  Q
    ||||||||||||    
T  2464766 ttatcactttag 2464777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 40612780 - 40612640
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||||||| |||| ||||||||||| ||||||| ||||| ||||||||| ||| |||  | |||||||||||||||||||||||    
T  40612780 aaatagtcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaatacagatattttcctgactctgcacttccgttatc 40612681  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgat 242  Q
    ||||||  ||||||||||       ||||||||||||||||    
T  40612680 actttaattcctgacgttaaaaaaatctgttaagtgatgat 40612640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 546156 - 546040
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||||| |||| |||| ||| ||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||||||||||||||||    
T  546156 aaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatc 546058  T
Q  202 actttagatcctgacgtt 219  Q
    |||||||  |||||||||    
T  546057 actttagtccctgacgtt 546040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 28591241 - 28591129
Alignment:
Q  96 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 195  Q
    ||||| ||||| |||||||  ||||||| |||||| ||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||    
T  28591241 aagagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcc 28591142  T
Q  196 gttatcactttag 208  Q
     ||||||||||||    
T  28591141 tttatcactttag 28591129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 18004635 - 18004746
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||||| |||||||||||||| |||||| |||||||||||| | ||| ||  |||||||||||| ||||| | |||  ||||||||||||||||    
T  18004635 agagtaaataattactttagtccctgactctgcacctcactgtcacaaaagtctatagcttaggattaaatacaaagaggtctatgactctgcacttccg 18004734  T
Q  197 ttatcactttag 208  Q
    ||||||||||||    
T  18004735 ttatcactttag 18004746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 2466900 - 2466778
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| ||||||| ||| |||| |||||| ||| || |||||||||||  ||| | ||||||||| | |||||||||||| ||||||||||||||    
T  2466900 agagcaaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccg 2466801  T
Q  197 ttatcactttagatcctgacgtt 219  Q
    ||||||||||||  |||||||||    
T  2466800 ttatcactttagtccctgacgtt 2466778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 18400198 - 18400284
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttc 194  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||| | ||| ||||| |||||||||||||||    
T  18400198 tcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcacttc 18400284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 19182977 - 19183058
Alignment:
Q  127 tgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||| ||| ||||||||||||||  ||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  19182977 tgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttag 19183058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 21069291 - 21069396
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||| |||| |||||| |||  ||||||| |||||  ||||| ||||||||| |||||||||||| |||||||||||||| ||| ||    
T  21069291 aaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcacttctgttttc 21069390  T
Q  202 acttta 207  Q
    ||||||    
T  21069391 acttta 21069396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 9538175 - 9538064
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| ||||||| |||||||| |||||| |||  ||||| |||||||| ||||| ||||||||| ||||| ||||| |||| | ||||||||||    
T  9538175 agagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccg 9538076  T
Q  197 ttatcactttag 208  Q
    |||||| |||||    
T  9538075 ttatcattttag 9538064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 19186318 - 19186235
Alignment:
Q  125 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||| ||| | ||||||||||||| ||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||    
T  19186318 tctgcatctcccagtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcactttag 19186235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 32640313 - 32640396
Alignment:
Q  125 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||| |||||||||||||||| |||| ||| ||||||||| |||||||||||||| |||||  ||||| |||||||||||||    
T  32640313 tctgcacctcactgtcacataggaccataactcaggattaaatacaaataagtccctaactctaaacttctgttatcactttag 32640396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 14881010 - 14881060
Alignment:
Q  163 taaacacaaataagtccctgactctgcacttccgttatcactttagatcct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14881010 taaacacaaataagtccctgactctgcacttccgttatcactttagttcct 14881060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 25590451 - 25590537
Alignment:
Q  120 ctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||| |||||| ||| ||||||||||||||| |||||  |||||||| ||||||||||| |||| |||||||||| ||||||||||||    
T  25590451 ctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctgattctgcacttctgttatcacttta 25590537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 9537033 - 9537130
Alignment:
Q  110 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||||||| | |||||| ||| ||||||||||||||  |||||||| |||||| ||||| |||| | ||||| ||||||||| ||||||||||||    
T  9537033 actttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagt-catgactgtgcacttccattatcactttag 9537130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 544685 - 544748
Alignment:
Q  137 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttat 200  Q
    ||||| |||||||  ||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  544685 tgtcagataggtctctgactcaggattaaatacaaataagtcactgactctgcacttccgttat 544748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 32641812 - 32641742
Alignment:
Q  137 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||| ||||||| | ||| | ||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  32641812 tgtcacgtaggtcccttactcaagattaaatacaaataagttgctgactctgcacttccgttatcacttta 32641742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 16611764 - 16611836
Alignment:
Q  136 ctgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||||||||||  ||||| ||||||||| ||||| ||| | |||| | ||||||||||||||||||||||    
T  16611764 ctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttag 16611836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 8075896 - 8075812
Alignment:
Q  160 gattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    ||||||| ||||| ||||  |||| ||||||||| ||||||||||||||  |||||||||       ||||||||||||||||||    
T  8075896 gattaaatacaaaaaagtatctgattctgcactttcgttatcactttagtccctgacgtttaaaaaatctgttaagtgatgatgt 8075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 4594170 - 4594118
Alignment:
Q  152 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactt 205  Q
    ||||| ||||||||| |||||||||||  ||||||||||||||| |||||||||    
T  4594170 tgactcaggattaaatacaaataagtca-tgactctgcacttccattatcactt 4594118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 13483218 - 13483174
Alignment:
Q  161 attaaacacaaataagtccctgactctgcacttccgttatcactt 205  Q
    |||||| ||||| ||||| |||||| |||||||||||||||||||    
T  13483218 attaaatacaaacaagtctctgactttgcacttccgttatcactt 13483174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 16979000 - 16979100
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||||||| ||| | |||| ||  ||| |||| |||||  ||||| || ||||||  ||||||||||||| |||||| |||| |||||||| ||||    
T  16979000 tcactttagtccttgactttgcaccttgctgccacaaaggtcattgactcagaattaaatgcaaataagtccctaactctgtacttacgttatcatttta 16979099  T
Q  208 g 208  Q
    |    
T  16979100 g 16979100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 43457454 - 43457601
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||    
T  43457454 agagaaaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccg 43457553  T
Q  197 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||||||| || |||||||       ||||||||||||||||||    
T  43457554 ttatcactttagttcatgacgttaagttattctgttaagtgatgatgt 43457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 244
Target Start/End: Complemental strand, 35729213 - 35729065
Alignment:
Q  96 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 195  Q
    ||||| ||||| |||||||| ||||||||| |||| ||| ||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||    
T  35729213 aagagcaaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgcacttcc 35729114  T
Q  196 gttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    | ||||||| |||  |||||| ||       ||||||||||||||||||    
T  35729113 gctatcactgtagtccctgacattaaataaatctgttaagtgatgatgt 35729065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 48646051 - 48646157
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| |||||||| | |||| ||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatc 48646150  T
Q  202 actttag 208  Q
    |||||||    
T  48646151 actttag 48646157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 48777258 - 48777364
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||| ||||||||||| ||| |||||||||| |||| ||||| | ||||||| |||||||| |||||||||||||||||||||||||    
T  48777258 aaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttatc 48777357  T
Q  202 actttag 208  Q
    |||||||    
T  48777358 actttag 48777364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 10899186 - 10899052
Alignment:
Q  110 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttaga 209  Q
    ||||| |||||||| |||||| ||| ||||||||||| ||| ||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||||     
T  10899186 actttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 10899087  T
Q  210 tcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
     |||||||||       ||||||||||||||||||    
T  10899086 ccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 35727707 - 35727842
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||  ||||||| |||||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||| |||||||||||| |||||||||||||||    
T  35727707 tcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgttatcacttta 35727806  T
Q  208 gatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    | ||||||||||       ||||||||||||||||||    
T  35727807 g-tcctgacgttaaaaatctctgttaagtgatgatgt 35727842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 7259814 - 7259663
Alignment:
Q  93 ttgaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcact 192  Q
    |||||||| ||||| |||||||| || |||||| || | ||| ||||||||| ||||  ||| | ||||||||| |||||||||||||||||||| ||||    
T  7259814 ttgaagagtaaatagtcactttaatcgctgattttgtagctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacact 7259715  T
Q  193 tccgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    ||||||||||||||||  |||||||||       ||||||||||||||||||    
T  7259714 tccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 30925129 - 30925023
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||| |||||||||||||| ||| | ||||||||||||| ||||| ||||||||| ||||||||||| |||||| ||||||||||||||     
T  30925129 aaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttatt 30925030  T
Q  202 actttag 208  Q
    |||||||    
T  30925029 actttag 30925023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 44333141 - 44333243
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| |||||||| |||||| ||| ||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  202 act 204  Q
    |||    
T  44333241 act 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 44334570 - 44334464
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||| |||||||||||| ||| |||| |||||||||| ||||| | ||||||| | |||||||||||||||||||||||||| |||||    
T  44334570 aaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttccattatc 44334471  T
Q  202 actttag 208  Q
    |||||||    
T  44334470 actttag 44334464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 7258277 - 7258419
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| |||||||| ||| || |||  |||||||||||||| | ||| ||||||||| ||||||||||| ||||||||||||||| ||||||    
T  7258277 aaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttatc 7258376  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  7258377 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 242
Target Start/End: Complemental strand, 48647569 - 48647424
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| ||||||||| |||||||||| || ||| || |||||||||||| ||||| ||||||||| ||||||||||| || |||||||||||  |    
T  48647569 agagcaaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttg 48647470  T
Q  197 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgat 242  Q
    ||||||||||||  |||||||||       ||||||||||||||||    
T  48647469 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgat 48647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 45583681 - 45583792
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| |||||||||||||||||||||||  || || |||||||||||| ||||| || |||||| ||| |||||| ||||| ||||||||||||    
T  45583681 agagcaaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcacttccg 45583780  T
Q  197 ttatcactttag 208  Q
    ||||||||||||    
T  45583781 ttatcactttag 45583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 12223824 - 12223714
Alignment:
Q  98 gagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgt 197  Q
    ||||||||  ||||||||||||||||  |||||  ||| |||||||||||||| ||||| ||||||||| | ||| ||||||||||||||||| ||||||    
T  12223824 gagaaaatggtcactttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgcagttccgt 12223725  T
Q  198 tatcactttag 208  Q
    ||| |||||||    
T  12223724 tattactttag 12223714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 46286505 - 46286610
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||||| ||| || ||| |||| | | |||||| ||||| ||||||||| ||||||||||| ||||||||||||||| ||||||    
T  46286505 aaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgttatc 46286604  T
Q  202 acttta 207  Q
    ||||||    
T  46286605 acttta 46286610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 8375709 - 8375598
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    ||||| |||| |||| ||||||||||| |  ||| | ||||||||||||||||| ||||| | ||||||| ||||| ||||  |||||||||||||||||    
T  8375709 agagataatagtcacattagtccctgacttcgcaccgcactgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccg 8375610  T
Q  197 ttatcactttag 208  Q
    |||||| |||||    
T  8375609 ttatcaatttag 8375598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 48788793 - 48788687
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||  ||| ||| | |||| ||| ||||||||||||||| ||||| |  |||||| | ||||||||| ||||||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatc 48788694  T
Q  202 actttag 208  Q
    |||||||    
T  48788693 actttag 48788687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 42477383 - 42477487
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||||||| ||| |||| ||| |||||| |||  |||| ||||||||  ||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  42477383 aaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagt-cctgactctgcacttccgttatc 42477481  T
Q  202 acttta 207  Q
    | ||||    
T  42477482 atttta 42477487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 8374926 - 8375022
Alignment:
Q  112 tttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||||||| |||||| ||| ||||||||||||||  ||||| || |||||| ||||| ||||  |||| | ||||||||||||||||||||||    
T  8374926 tttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcactttag 8375022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 13578391 - 13578325
Alignment:
Q  152 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 219  Q
    ||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  13578391 tgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttag-tcctgacgtt 13578325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 45584566 - 45584475
Alignment:
Q  153 gacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||| ||||||||| ||||||||| |  ||||||||||||||||||||||||||||  |||||||||       ||||||||||||||||||    
T  45584566 gactcaggattaaatacaaataagccaatgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 39708111 - 39708211
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    ||||||||||| |||| |||| | ||| | |||||| |||||||||||| | |||| || ||||| ||||| | |||| |||||||||||||||||||||    
T  39708111 tcactttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgttatcacttta 39708210  T
Q  208 g 208  Q
    |    
T  39708211 g 39708211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 44530681 - 44530626
Alignment:
Q  153 gacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||    
T  44530681 gactcaggattaaatataaataagtctctgactctgcacttccgttatcactttag 44530626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 8048905 - 8048800
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||  | |||| |||||| ||| ||| |||| |||||  ||||| | ||||||| ||||| ||||| | ||||||||||||||||||||    
T  8048905 aaatagtcactttaccctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgttatc 8048806  T
Q  202 acttta 207  Q
    ||||||    
T  8048805 acttta 8048800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 33607688 - 33607627
Alignment:
Q  158 aggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 219  Q
    ||||||||| ||||| ||||| |||| |||||||||||||||||| |||||| |||||||||    
T  33607688 aggattaaatacaaagaagtctctgattctgcacttccgttatcattttagaccctgacgtt 33607627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 21062815 - 21062917
Alignment:
Q  98 gagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgt 197  Q
    ||||||||  |||||||||||||||| | |||| ||| |||||| | |||||| ||||| ||||||||| ||| | ||||||  | |||||||| |||||    
T  21062815 gagaaaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaatacatagaagtcctcggctctgcacctccgt 21062914  T
Q  198 tat 200  Q
    |||    
T  21062915 tat 21062917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 44529068 - 44529147
Alignment:
Q  140 cacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 219  Q
    ||||||| ||| ||||| | ||||||| ||||||||||| | |||||  |||||| |||||||||||||  |||||||||    
T  44529068 cacatagatccctgactcatgattaaatacaaataagtctccgactcaacacttctgttatcactttagtccctgacgtt 44529147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 32793225 - 32793279
Alignment:
Q  154 acttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||||||||| |||||||||||  ||| |||||| ||| |||||||||||||    
T  32793225 acttaggattaaatacaaataagtcattgattctgcatttcggttatcactttag 32793279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 19434049 - 19433949
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||||||||| | ||| || |||  ||||||| |||||  ||| ||||||||||| | ||  ||||| | ||||| ||||||| ||||||||||||    
T  19434049 tcactttagtccctaactctccatctcgttgtcacaaaggtctctgatttaggattaaatataaggaagtcaccgactccgcacttcagttatcacttta 19433950  T
Q  208 g 208  Q
    |    
T  19433949 g 19433949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 17330358 - 17330209
Alignment:
Q  95 gaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttc 194  Q
    |||||| ||||| || ||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||| |||    
T  17330358 gaagagcaaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttc 17330259  T
Q  195 cgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    ||||||||||||||  | |||||||       ||||||||||||||||||    
T  17330258 cgttatcactttagtccatgacgttaagttattctgttaagtgatgatgt 17330209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 31091648 - 31091542
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| |||||||| |||||| ||  ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 31091549  T
Q  202 actttag 208  Q
    |||||||    
T  31091548 actttag 31091542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 32766360 - 32766254
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| |||||||| |||||| |||  |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  32766360 aaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 32766261  T
Q  202 actttag 208  Q
    |||||||    
T  32766260 actttag 32766254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 31090166 - 31090283
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||| ||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||| |||||||||||||||||||||     
T  31090166 aaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttatg 31090265  T
Q  202 actttagatcctgacgtt 219  Q
    | |||||  |||||||||    
T  31090266 attttagtccctgacgtt 31090283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 32764940 - 32765045
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||||||||||||||| ||   ||||| |||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  32764940 aaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 32765039  T
Q  202 acttta 207  Q
    ||||||    
T  32765040 acttta 32765045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 2910102 - 2910244
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    |||||||||||||||||  ||||| |||| ||| ||||||||||| ||| |||||  |||||||| ||||||||||| |||||||||||||||| || ||    
T  2910102 aaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtc 2910201  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  2910202 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 2910244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 7073641 - 7073783
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||| | |||||||| || |||||| ||||||||  ||| |  |||||||| ||||||||||| |||| |||||||||||||||||    
T  7073641 aaatagtcactttagtccttcattctgcagcttactgtcgcataggtctctgattcgggattaaatacaaataagtctctgattctgcacttccgttatc 7073740  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  7073741 actttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 14704048 - 14704125
Alignment:
Q  142 cataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 219  Q
    ||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagtccctgacgtt 14704125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 24459561 - 24459461
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    ||||||| |||||||| |||||| ||| ||||||||||||||| ||| | ||||||||| ||||||||||| ||||| |||||||||  |||||||||||    
T  24459561 tcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcacttta 24459462  T
Q  208 g 208  Q
    |    
T  24459461 g 24459461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 24458062 - 24458168
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||||||| |||| ||| || |||||||||||| ||||| |  |||||| ||||||||||  |||||||| ||||| |||||||    
T  24458062 aaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactctacactttcgttatc 24458161  T
Q  202 actttag 208  Q
    |||||||    
T  24458162 actttag 24458168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 34037793 - 34037688
Alignment:
Q  103 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 202  Q
    |||| |||||||||||| ||| |||||| ||  |||||| | |||||||| ||| ||||||||| |||||||||||  |||||||||||||| |||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatca 34037694  T
Q  203 ctttag 208  Q
    ||||||    
T  34037693 ctttag 34037688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 40000449 - 40000315
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    ||||||| |||||||| |||||| ||| |||| |||||| ||| ||| | ||||||||| ||||||||||| || || ||||||||||||||||||||||    
T  40000449 tcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatcacttta 40000350  T
Q  208 gatcctgacgttnnnnnnntctgttaagtgatgat 242  Q
       |||||||||       ||||||||||||||||    
T  40000349 ttccctgacgttaagaaaatctgttaagtgatgat 40000315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 39015007 - 39015113
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||||||||||| |||||||| |||||| ||| ||| ||||||| ||| ||||| ||||||||| ||||||| |||  ||||||||||||| | |||||    
T  39015007 aaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgcactttcattatc 39015106  T
Q  202 actttag 208  Q
    | |||||    
T  39015107 attttag 39015113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 17466926 - 17466843
Alignment:
Q  125 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||| ||| |||||||||| | |  ||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  17466926 tctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttag 17466843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 2911612 - 2911506
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| ||| ||| ||||||| ||| |||||||||| | |||||||| |   ||||| | ||||||||| |||||| |||||||||||||||    
T  2911612 aaatagtcactttggtctctggttctgcagctcgctgtcacataaggccatgactcaaagttaaatataaataagtctctgactttgcacttccgttatc 2911513  T
Q  202 actttag 208  Q
    |||||||    
T  2911512 actttag 2911506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 5915113 - 5915012
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||| ||| |||||| ||| || ||| |||||||  ||||| || |||||| ||||| ||||| || |||||||||||||||||||    
T  5915113 aaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccgttatc 5915014  T
Q  202 ac 203  Q
    ||    
T  5915013 ac 5915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 39016502 - 39016398
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccat--gacttaggattaaacacaaataagtccctgactctgcacttccgtta 199  Q
    ||||| ||||||||||| ||||||||||| ||| ||||||||||  ||  |  |||| ||||||||| |||||||||||    |||||||||||||||||    
T  39016502 aaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc----actctgcacttccgtta 39016407  T
Q  200 tcactttag 208  Q
    |||||||||    
T  39016406 tcactttag 39016398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 34582785 - 34582674
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||| ||||||||||| |||||| ||  |||| ||| |||||  |||||  |||||||| |||||  ||||||||| | |||||||||||||||||||||    
T  34582785 tcacgttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttta 34582686  T
Q  208 gatcctgacgtt 219  Q
    |  |||||||||    
T  34582685 gtccctgacgtt 34582674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 38985103 - 38985004
Alignment:
Q  109 cactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||| |||| | | |||| |||||||||||| || |  ||||||  | |||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  38985103 cactttagcccctaactttgcacctcactgtcacaaagatttatgactcggaattaaatacaaagaagtccttgactctgcacttccgttatcactttag 38985004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 21733834 - 21733786
Alignment:
Q  160 gattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  21733834 gattaaatacaaataagtctctgactctgcacttccgtcatcactttag 21733786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 17466084 - 17466159
Alignment:
Q  143 ataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgt 218  Q
    |||||| | ||||| ||||||||| ||||| |  || ||||||||||||||||||| |||||||||  ||||||||    
T  17466084 ataggttcttgactcaggattaaatacaaagatatctctgactctgcacttccgttttcactttagtccctgacgt 17466159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 38853763 - 38853863
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    ||||||| |||||||| ||| ||  ||| ||||| | |||||  ||||| ||||||||| |||||  ||||||| | | |||||||||||||||| ||||    
T  38853763 tcactttggtccctgactctacacttcattgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaattta 38853862  T
Q  208 g 208  Q
    |    
T  38853863 g 38853863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 17702040 - 17701923
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||| ||||||||||| ||| |||||| |||||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  17702040 aaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 17701941  T
Q  202 actttagatcctgacgtt 219  Q
    |||||||  |||||||||    
T  17701940 actttagtccctgacgtt 17701923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 2592128 - 2592022
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||| |||||||| ||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||   ||||||||||||    
T  2592128 aaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgttatc 2592029  T
Q  202 actttag 208  Q
    |||||||    
T  2592028 actttag 2592022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 17700515 - 17700637
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| |||||||||||  ||| |||||| |||  |||||||||||| | ||||| ||||||||| |||||||||||||||||||||||||||||    
T  17700515 agagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccg 17700614  T
Q  197 ttatcactttagatcctgacgtt 219  Q
    ||||||||||||  |||||||||    
T  17700615 ttatcactttagtccctgacgtt 17700637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 55388075 - 55388192
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||||||||||||||| ||| |||||| |||||||  ||||| ||||||||| ||||||||||  ||||||||||||| ||||||||    
T  55388075 aaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccgttatc 55388174  T
Q  202 actttagatcctgacgtt 219  Q
    |||||||  |||||||||    
T  55388175 actttagtccctgacgtt 55388192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 2591629 - 2591769
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||||||||||||||| ||  ||||||||||||||| ||||| ||||||||| ||||| ||||| |||||||||||||||| | |||    
T  2591629 aaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccatgatc 2591728  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgat 242  Q
    |||||||  ||||| |||       ||||||||||||||||    
T  2591729 actttagtccctgatgttaagttattctgttaagtgatgat 2591769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 36278954 - 36279071
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||||||| | || |||  |||||||||||||| ||| | ||||||||| ||||||||||| ||||||||||||||||||||||    
T  36278954 aaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatc 36279053  T
Q  202 actttagatcctgacgtt 219  Q
    | |||||  |||||||||    
T  36279054 attttagtccctgacgtt 36279071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 48572987 - 48573093
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| |||||||| |||||| |||  | |||||||||||| ||||| ||||||||| ||||||||| | ||||||||||||||||||||||    
T  48572987 aaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatc 48573086  T
Q  202 actttag 208  Q
    |||||||    
T  48573087 actttag 48573093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 52318438 - 52318297
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| ||| |||| ||||||  || ||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||| | |||     
T  52318438 aaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctgatatt 52318339  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatg 243  Q
    |||||||  |||||||||       |||||||||||||||||    
T  52318338 actttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 52316976 - 52317123
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||| |||||||  ||||| | ||||||| |||||||||||  | ||||||||| ||||    
T  52316976 agagcaaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccg 52317075  T
Q  197 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||| |||||  | |||||||       ||||||||||||||||||    
T  52317076 ttatcattttagtccatgacgttaaaaaaatctgttaagtgatgatgt 52317123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 11773143 - 11773066
Alignment:
Q  131 actcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||| ||||||||||||||| ||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  11773143 actcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttag 11773066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 48808366 - 48808474
Alignment:
Q  102 aaataatcacttta--gtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgtta 199  Q
    ||||||||||||||  ||||||||||||||| ||| |||| | |||||||  ||||| ||||||||| |||||||||| ||| ||||||||||||||||     
T  48808366 aaataatcactttatagtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagttcctaactctgcacttccgttg 48808465  T
Q  200 tcactttag 208  Q
    |||||||||    
T  48808466 tcactttag 48808474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 45601053 - 45600954
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||||||||||| ||||   ||| ||||||||||||||| ||| | ||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  45601053 tcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagt-cctgactctgcacttccgttatcacttta 45600955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 34263802 - 34263912
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| ||||||| | |||||| |||||| ||| |||||||| |||||| ||| | ||||||||| ||||||||||| |||||||| |||||||     
T  34263802 agagcaaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttcca 34263901  T
Q  197 ttatcacttta 207  Q
    |||||||||||    
T  34263902 ttatcacttta 34263912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 55389590 - 55389484
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||| |||||| | |||||| ||| ||||||||||||||  ||||| |  |||||| |||| ||||||||||||||| |||||||||||||    
T  55389590 aaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttccgttatc 55389491  T
Q  202 actttag 208  Q
    |||||||    
T  55389490 actttag 55389484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 33428550 - 33428450
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    ||||||| |||||||| |||||| |||  |||||||||||||| ||||| || |||||| ||||| |||||| |||||||||| ||||||| ||||||||    
T  33428550 tcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgtcacttta 33428451  T
Q  208 g 208  Q
    |    
T  33428450 g 33428450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 36280401 - 36280321
Alignment:
Q  139 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 219  Q
    |||||||||||  ||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||  |||||||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagtccctgacgtt 36280321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 48574538 - 48574474
Alignment:
Q  144 taggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  48574538 taggtccctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttag 48574474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 20464078 - 20464177
Alignment:
Q  109 cactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||||||| || |||||| |||  ||||||| |||||| || || | ||||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  20464078 cactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcactttag 20464177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 47118166 - 47118055
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||||||||||| |||||| |||  ||||| ||| ||||  |||| |||||||||  |||| ||||| |||||||||||||| |||||||||||||    
T  47118166 tcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgttatcacttta 47118067  T
Q  208 gatcctgacgtt 219  Q
    |  |||||||||    
T  47118066 gtccctgacgtt 47118055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 19114535 - 19114641
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    |||| ||||||||||||||||| ||||||  ||  ||||||| |||||| ||||| | ||||||| ||||| ||||| || ||| |||||||||||||||    
T  19114535 aaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatc 19114634  T
Q  202 actttag 208  Q
    |||||||    
T  19114635 actttag 19114641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 53959187 - 53959115
Alignment:
Q  136 ctgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||||||||||  ||||| | ||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttag 53959115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 53957672 - 53957769
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 195  Q
    |||| ||||| |||||||||| | |||||||||||||| |||| |||||||| | ||||| |||| |||| |||||||||||  |||||||||||||||    
T  53957672 agagcaaatagtcactttagtacttgattctgcaactcgctgttacataggttcctgactcagga-taaatacaaataagtctatgactctgcacttcc 53957769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 47075466 - 47075366
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||| ||| ||| |||||| |||  |||||||||||||| | ||| | ||||||| ||||| ||  |||||||||| |||||||||||||||||||    
T  47075466 tcactttaatccttgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaagaaacccctgactctacacttccgttatcacttta 47075367  T
Q  208 g 208  Q
    |    
T  47075366 g 47075366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 244
Target Start/End: Original strand, 50753820 - 50753961
Alignment:
Q  103 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 202  Q
    |||| ||||||||||||||   |||||| ||| ||||||||||||||| | | | ||||||||| | ||| ||||  |||||||| |||||| |||||||    
T  50753820 aatagtcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctgactctacacttctgttatca 50753919  T
Q  203 ctttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    ||||||  |||| ||||       ||||||||||||||||||    
T  50753920 ctttagtccctgccgttaaaaaaatctgttaagtgatgatgt 50753961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 19115267 - 19115162
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||| | ||| |||||| |||  |||||||||||||| | ||| ||||||||| ||||| |||| | |||||||||||||||||| |     
T  19115267 aaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagt-catgactctgcacttccgttttt 19115169  T
Q  202 actttag 208  Q
    |||||||    
T  19115168 actttag 19115162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 19331110 - 19331183
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataa 175  Q
    |||||| |||||| || ||||| |||||| ||  ||||||||||||||| ||||| ||||||||| ||||||||    
T  19331110 aaataaccactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 33427791 - 33427859
Alignment:
Q  139 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||||||| ||| | ||||||||| |||||| |  |||||||||||||||| ||||||||||||||    
T  33427791 tcacataggtccttgattcaggattaaatacaaattaa-ccctgactctgcactttcgttatcactttag 33427859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 47427882 - 47427959
Alignment:
Q  122 gattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgtta 199  Q
    |||| |||| ||| ||||||||||||||| ||||| |  |||||| ||||| |||||||||||| ||||||| |||||    
T  47427882 gattgtgcacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgactgtgcacttacgtta 47427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 49261620 - 49261552
Alignment:
Q  137 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||||||||| ||||| ||||||||| |||   ||||| || |||||||| |||||||||||||||||    
T  49261620 tgtcacataggtccctgactcaggattaaataca---aagtctctaactctgcatttccgttatcactttag 49261552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 3671077 - 3671145
Alignment:
Q  139 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    ||||| |||||  ||||| || |||||| |||||||||||  ||||||| |||||||||||||||||||    
T  3671077 tcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccacttccgttatcacttta 3671145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 48809697 - 48809669
Alignment:
Q  180 ctgactctgcacttccgttatcactttag 208  Q
    |||||||||||||||||||||||||||||    
T  48809697 ctgactctgcacttccgttatcactttag 48809669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 244
Target Start/End: Complemental strand, 32665897 - 32665749
Alignment:
Q  96 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 195  Q
    ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||  ||||| | ||||||| |||||||||||  |||||||||||||||    
T  32665897 aagagcaaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttcc 32665798  T
Q  196 gttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||||||||  |||| ||||       ||||||||||||||||||    
T  32665797 gttatcactttagtccctggcgttacaaaaatctgttaagtgatgatgt 32665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 9339648 - 9339790
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| || |||||||||||||||||||| |||  ||| |||||||||| ||||| ||||||||| |||||||| |||| ||||||||||||||||||||    
T  9339648 aaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgttatc 9339747  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  9339748 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 7945675 - 7945558
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||||||| ||| |||||||| |||||| ||| ||||||||||||| | ||||| ||||||||| ||||||||||| |||||| |||||||||||||||    
T  7945675 aaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatc 7945576  T
Q  202 actttagatcctgacgtt 219  Q
    |||||||  |||||||||    
T  7945575 actttagtccctgacgtt 7945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 10332983 - 10333128
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| |||||||||||||||| | |||| |||  |||||||||||||| ||| | ||||||||| | |||||||||||| ||||||||||||||    
T  10332983 agagcaaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccg 10333082  T
Q  197 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgat 242  Q
    |||||| |||||  | |||||||       ||||||||||||||||    
T  10333083 ttatcattttagtccttgacgttaaaaaaatctgttaagtgatgat 10333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 7944169 - 7944263
Alignment:
Q  114 tagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||||||| |||||||| ||||||||||||||| ||||| |  |||||| |||||||||||| ||||||||||||| |||||||| |||||    
T  7944169 tagtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatcaatttag 7944263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 10333307 - 10333201
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||| || || ||||||||||| ||| |||| |||||||||  ||||| | ||||||| ||||||||||| ||||||||||||||||||||||    
T  10333307 aaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttccgttatc 10333208  T
Q  202 actttag 208  Q
    |||||||    
T  10333207 actttag 10333201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 9341125 - 9341040
Alignment:
Q  123 attctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||||||| |||||| |||||||||||| ||||| ||||||||| ||||||||||| |||||| |||||||| |||||||||||||    
T  9341125 attctgcatctcactatcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgttatcactttag 9341040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 52439476 - 52439619
Alignment:
Q  97 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 196  Q
    |||| ||||| ||||||||| ||||||||||||| ||| ||||||||||||||  || || ||||||||| ||| |||||||     ||||||| |||||    
T  52439476 agagcaaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtc----tctctgcatttccg 52439571  T
Q  197 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    ||||||||||||  |||||||||       ||||||||||||||||||    
T  52439572 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 52439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 52440680 - 52440574
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    |||||||||| || ||| |||| | ||||  || ||||||||||||||| ||| | ||||||||| | ||||||||| |||||||||||||||| |||||    
T  52440680 aaataatcacattggtctctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatc 52440581  T
Q  202 actttag 208  Q
    |||||||    
T  52440580 actttag 52440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 5782409 - 5782522
Alignment:
Q  95 gaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttc 194  Q
    |||||| ||||  ||| |||||||||||| |||||| ||| ||||||||||||||  ||||| | ||||||| ||||| ||||| |||| | ||||||||    
T  5782409 gaagagcaaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttc 5782508  T
Q  195 cgttatcactttag 208  Q
    | ||||||||||||    
T  5782509 ccttatcactttag 5782522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 5783205 - 5783124
Alignment:
Q  127 tgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||| ||| ||||||||||| |||  |||| || |||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  5783205 tgcacctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcactttag 5783124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 6612421 - 6612526
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||||||| |||||| ||| |||| | | | |||  ||||| | ||||||| ||||| ||||| |||||||||||||||| |||||    
T  6612421 aaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatc 6612520  T
Q  202 acttta 207  Q
    ||||||    
T  6612521 acttta 6612526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 6614050 - 6613994
Alignment:
Q  152 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||| ||||||| |||||    
T  6614050 tgactcaggattaaatacaaataagtctctgactctgcacttcagttatcattttag 6613994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 22856732 - 22856788
Alignment:
Q  152 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||| ||||||||| ||||| ||||| || ||||||||||||||||||||||||||    
T  22856732 tgactcaggattaaatacaaagaagtctctaactctgcacttccgttatcactttag 22856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 534655 - 534574
Alignment:
Q  125 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||| ||| |||| |||||||| | ||| | ||||||||| ||||| |||||| ||||||| |||||| ||||||||||||    
T  534655 tctgcacctcgctgttacataggttcttgattcaggattaaatacaaacaagtcc-tgactctacacttctgttatcacttta 534574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 3117688 - 3117757
Alignment:
Q  139 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||| |||||  ||||| | ||||||| ||||| || || |||||||| ||||||||||||||||||||    
T  3117688 tcacaaaggtctctgactcaagattaaatacaaagaaatctctgactctccacttccgttatcactttag 3117757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 11060880 - 11060799
Alignment:
Q  127 tgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||| ||| |||||||| |||||||||||| |  |||||| |||||  ||||||||| |  |||||| ||||||||||||||    
T  11060880 tgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgttatcactttag 11060799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 25037925 - 25037986
Alignment:
Q  147 gtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||| ||||| | ||||||| ||||| ||||| ||||||||| |||| ||||||||||||||    
T  25037925 gtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttag 25037986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 25043137 - 25043198
Alignment:
Q  147 gtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||| ||||| | ||||||| ||||| ||||| ||||||||| |||| ||||||||||||||    
T  25043137 gtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttag 25043198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 44019996 - 44020088
Alignment:
Q  110 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 202  Q
    ||||| |||||||| | ||||||||  ||||||| | |||  ||||| | ||||||| | ||| ||||| |||||||||||||| ||||||||    
T  44019996 actttggtccctgactttgcaactcgttgtcacaaaagtctctgactcaagattaaatataaagaagtctctgactctgcacttacgttatca 44020088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 116057 - 116163
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||| ||| |||||||| ||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  116057 aaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatc 116156  T
Q  202 actttag 208  Q
    |||||||    
T  116157 actttag 116163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 30748001 - 30748107
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||| ||||| |||||||| ||||| |||||||    
T  30748001 aaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgttatc 30748100  T
Q  202 actttag 208  Q
    |||||||    
T  30748101 actttag 30748107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 31218963 - 31219062
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||| || |||| |||||| ||| ||||||||||||||| | ||| ||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  31218963 tcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgttatcacttta 31219062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 31219275 - 31219175
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||| ||||||| |||||| ||| ||||||||||||||  | ||| ||||||||| ||||| |||| ||||||||  |||||||||||||||||||    
T  31219275 tcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatcacttta 31219176  T
Q  208 g 208  Q
    |    
T  31219175 g 31219175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 23507945 - 23508056
Alignment:
Q  96 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 195  Q
    ||||| ||||| ||||||||||| ||| | || || ||| ||||||||||||| | ||| | ||||||||| ||||| || ||  ||||| | |||||||    
T  23507945 aagagcaaatagtcactttagtctctgct-ctacacctccctgtcacataggttcctgattcaggattaaatacaaacaaatctatgactttacacttcc 23508043  T
Q  196 gttatcactttag 208  Q
     ||||||||||||    
T  23508044 tttatcactttag 23508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 42278051 - 42278193
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||||||| |||||||||| ||  ||||||||||||||| |||||  |||||||| |||||||||| |||||||||||||||||||||||    
T  42278051 aaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatc 42278150  T
Q  202 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    ||||||   |||||||||       ||||||||||||||||||    
T  42278151 actttaatccctgacgttaaaaaaatctgttaagtgatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 47874566 - 47874672
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||||||||||| ||||||||||| ||| || |||||||||||| ||||| | ||||||| |||||||||||||||| |||||||||||||||||    
T  47874566 aaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatc 47874665  T
Q  202 actttag 208  Q
    |||||||    
T  47874666 actttag 47874672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 53771164 - 53771064
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||||||||||| |||||| |||  |||||||||||||| ||||| || |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  53771164 tcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttatcacttta 53771065  T
Q  208 g 208  Q
    |    
T  53771064 g 53771064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 47878605 - 47878499
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| |||||||  ||||||| |||||| ||| |||| |||||||||| |||||  |||||||| |||||||||||||||||||| |||||||||||||    
T  47878605 aaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatc 47878506  T
Q  202 actttag 208  Q
    |||||||    
T  47878505 actttag 47878499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 31844715 - 31844828
Alignment:
Q  93 ttgaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcact 192  Q
    |||||||| ||||| ||||||||||||||   |||||| ||| ||||||||||||||| ||||| ||||||||| ||||| |||||||| ||||| ||||    
T  31844715 ttgaagagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacact 31844814  T
Q  193 tccgttatcacttt 206  Q
    ||| ||||||||||    
T  31844815 tcccttatcacttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 26173062 - 26172957
Alignment:
Q  103 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 202  Q
    |||| |||||||||||||  | | |||| || ||||||| | |||||| ||||| | ||||||| ||||||||||| |||||||||||||||||||||||    
T  26173062 aatagtcactttagtccccaactatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctgactctgcacttccgttatca 26172963  T
Q  203 ctttag 208  Q
    ||||||    
T  26172962 ctttag 26172957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 54574450 - 54574532
Alignment:
Q  125 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||| ||| ||||||||||||||  ||||| ||||||||| |||||||||| | | |||||||||||||||||||||||||    
T  54574450 tctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatcacttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 4701801 - 4701907
Alignment:
Q  136 ctgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgttnnnnnnntctgttaag 235  Q
    |||||||| ||||| |||||||| ||||||| ||||| ||||||| |||| |||||||||| |||||||||||  ||||| |||       |||||||||    
T  4701801 ctgtcacaaaggtctatgacttatgattaaatacaaagaagtccccgactatgcacttccgctatcactttagtccctgatgttaaataattctgttaag 4701900  T
Q  236 tgatgat 242  Q
    |||||||    
T  4701901 tgatgat 4701907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 48740135 - 48740024
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    |||||||||||| ||  |||||| |||| |||||| ||| ||| ||||| |  |||||| ||||| |||||||  |||||||||||| ||||||||||||    
T  48740135 tcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgttatcacttta 48740036  T
Q  208 gatcctgacgtt 219  Q
    |  |||||||||    
T  48740035 gtccctgacgtt 48740024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 4703332 - 4703232
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 207  Q
    ||||||||||  |||| ||| || ||| ||||||||||||||| | ||| || |||||| ||||| |||||  ||||| | |||||||||||||||||||    
T  4703332 tcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcacttta 4703233  T
Q  208 g 208  Q
    |    
T  4703232 g 4703232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 26170692 - 26170748
Alignment:
Q  152 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||| ||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  26170692 tgacttaagattaaatacaaataagttccttactctgcacttccattatcactttag 26170748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 53770341 - 53770437
Alignment:
Q  108 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcact 204  Q
    ||||||||||| |||| |||||| ||| |  |||||||||| | ||||| || |||||| ||||| |||||  ||||||||||||||| ||||||||    
T  53770341 tcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccattatcact 53770437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 39868932 - 39869028
Alignment:
Q  110 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||||| |||| |||||| ||| |||| ||| |||||| ||||| |  |||||| ||||| |||| |  |||||||||||||||||||||||||||    
T  39868932 actttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagttc--gactctgcacttccgttatcactttag 39869028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 39870795 - 39870692
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    |||| ||||||||| || |||| |||||| ||| |||||||||| || | ||| | | ||||||||||| | || || ||||||||||||||||| ||||    
T  39870795 aaatgatcactttaatctctgactctgcacctcgctgtcacataagttcctgagtcaagattaaacacagagaaatcactgactctgcacttccgatatc 39870696  T
Q  202 actt 205  Q
    ||||    
T  39870695 actt 39870692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 42392009 - 42391930
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccct 181  Q
    |||| |||||||||||| |||| || ||| ||||||||||||||||||  ||||| | ||||||| |||||| |||||||    
T  42392009 aaatgatcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtccct 42391930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 2786253 - 2786329
Alignment:
Q  132 ctcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    |||| ||||||| |||| ||||||| ||||||||| |||||| | ||| ||| | |||||||||||||||| |||||    
T  2786253 ctcagtgtcacaaaggttcatgactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttag 2786329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 19050298 - 19050346
Alignment:
Q  160 gattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||||| ||||| ||||| | |||||||||||||||||||||||||||    
T  19050298 gattaaatacaaagaagtctcggactctgcacttccgttatcactttag 19050346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 54574881 - 54574822
Alignment:
Q  147 gtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttt 206  Q
    |||| ||||| ||||||||| |||||||| || || |||||||||||| |||||||||||    
T  54574881 gtccttgactcaggattaaatacaaataaatctctaactctgcacttctgttatcacttt 54574822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 50694810 - 50694893
Alignment:
Q  161 attaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 244  Q
    |||||| | ||||||||  |||| ||||||||||||||||| ||||||  |||||||||       ||||||||||||||||||    
T  50694810 attaaatataaataagtttctgattctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatgt 50694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 74433 - 74331
Alignment:
Q  103 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 202  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||| | ||| | ||||||| ||||| |||||| ||||||| ||| || | |||||    
T  74433 aatagtcagtttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtccttgactctacacctctgatatca 74334  T
Q  203 ctt 205  Q
    |||    
T  74333 ctt 74331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 79075 - 79181
Alignment:
Q  102 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 201  Q
    ||||| ||| |||||| ||||| |||||| ||| ||||||||||||||| ||||| | ||||||| | ||| |||||| ||||| ||||| |||| ||||    
T  79075 aaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctccgatatc 79174  T
Q  202 actttag 208  Q
    |||||||    
T  79175 actttag 79181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 5651 - 5707
Alignment:
Q  152 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 208  Q
    ||||| || |||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  5651 tgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttag 5707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University