View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20261_high_47 (Length: 248)
Name: NF20261_high_47
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 25506228 - 25506136
Alignment:
| Q |
140 |
aatcaaacaaacaaactcattcttcttcaatttaggtcaaaaagtgttcgaatgggatcaaaccttagatgaggtcaatatttacatcaatct |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25506228 |
aatcaaacaaacaaactcattcttcttcaatttaggtcaaaaagtgttcgaatgggatcaaactttagatgaggtcaatatttacatcaatct |
25506136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 25506347 - 25506274
Alignment:
| Q |
21 |
atcaaagacgagtttacaaaaatggcagaaaaattggcaccagaaaagcgtcacatattcctccacaacggtac |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25506347 |
atcaaagacgagtttacaaaaatggcagaaaaattggcaccagaaaagcgtcacatattcctccacaacggtac |
25506274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University