View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_5 (Length: 623)
Name: NF20261_high_5
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_5 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 23 - 606
Target Start/End: Original strand, 18949324 - 18949903
Alignment:
| Q |
23 |
atagtcataacagaataaaatcacggcagctaaaagacggaataaagtaagtaagtaagtcatgactgattaacattaaaaaacaataattcaatgaaac |
122 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| |
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| T |
18949324 |
atagtcgtaacagaataaaatcacggcagctaaaagacggaataaagt----aagtaagtcatgactgattaacattaaaaaacagtagttcaaagaaac |
18949419 |
T |
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| Q |
123 |
gaaatttttgaatatgtttctaatcttgatgttacaactttcgattttacaatttatcgaggaacttctaatccaaatactactccagcgtatttttcaa |
222 |
Q |
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| T |
18949420 |
aattttttttaatatgtttctgattttgatgttacaactttcgattttacaatttatcgaggaacttctaatccaaatactactccagcgtatttttcaa |
18949519 |
T |
|
| Q |
223 |
attctttgtgactgaaatgtgtttgcaccaacttatcaaaagtgtgccatgtcaacaagctatcagatccagattgatgacactttccaacaacccgatc |
322 |
Q |
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| T |
18949520 |
attctctgtgactgaaatgtgtttgcaccaacttatcaaaagtgtgccatgtcaacaagctatcggatccagattgatgacactttccaacaacccgatc |
18949619 |
T |
|
| Q |
323 |
caccttgagtgtacttgcaacccgatcaagaccaccatacaatgcattgctgtaacggatcatgtgtttcatatcatagacgttccttccgaataatatt |
422 |
Q |
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| T |
18949620 |
caccttgagtgtacttgcaacccgatcaagaccaccatacaatgcattgctgtagcggatcatgtgtttcatatcatagatgttccgtccgaataatatt |
18949719 |
T |
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| Q |
423 |
tccaaaatgttcaaaaactctttcaaagtgtcaggcagatttcttcggatcaatatcttgaccaagtaagcaaaatcataagcaccatgaaaagtcaccc |
522 |
Q |
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| T |
18949720 |
tccaaaatgttcaaaaactctttcaaagtgtcaggcagatttcttcggatcaatatcttgaccaagtaagcaaaatcataagcaccatgaaaagtcaccc |
18949819 |
T |
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| Q |
523 |
aagtcattgatttcttgaatataagtccagacttcaacatcagttcagcaaaacggaatgagtcgacaccttgagagacacaac |
606 |
Q |
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| T |
18949820 |
aagtcattgatttcttgaacataagtccagacttcaacatcagttcagcaaaacggaatgagtcgacaccttgagagacacaac |
18949903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 23590 - 23458
Alignment:
| Q |
93 |
taacattaaaaaacaataattcaatgaaacgaaatttttgaatatgtttctaatcttgatgttacaactttcgattttacaatttatcgaggaacttcta |
192 |
Q |
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| T |
23590 |
taacattaaaaaacagtagttgaaagaaacaatttttttgaatatgtttctgattttgatgttacaactttcgattttacaatttatcgaggaacttcta |
23491 |
T |
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| Q |
193 |
atccaaatactactccagcgtatttttcaaatt |
225 |
Q |
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| T |
23490 |
atccaaatactactccagcgtatttttcaaatt |
23458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 20719752 - 20719620
Alignment:
| Q |
93 |
taacattaaaaaacaataattcaatgaaacgaaatttttgaatatgtttctaatcttgatgttacaactttcgattttacaatttatcgaggaacttcta |
192 |
Q |
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| T |
20719752 |
taacattaaaaaacagtagttgaaagaaacaatttttttgaatatgtttctgattttgatgttacaactttcgattttacaatttatcgaggaacttcta |
20719653 |
T |
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| Q |
193 |
atccaaatactactccagcgtatttttcaaatt |
225 |
Q |
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| T |
20719652 |
atccaaatactactccagcgtatttttcaaatt |
20719620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 267 - 422
Target Start/End: Original strand, 40871675 - 40871830
Alignment:
| Q |
267 |
tgccatgtcaacaagctatcagatccagattgatgacactttccaacaacccgatccaccttgagtgtacttgcaacccgatcaagaccaccatacaatg |
366 |
Q |
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|||||||||||||| ||||| ||||||| |||||| ||||||||||| | ||| ||| || |||||||| || || || || |||||||||||||| | |
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| T |
40871675 |
tgccatgtcaacaaactatctgatccagcttgatgcgactttccaacagctcgacacacattaagtgtactagcgactcgctcgagaccaccatacaaag |
40871774 |
T |
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| Q |
367 |
cattgctgtaacggatcatgtgtttcatatcatagacgttccttccgaataatatt |
422 |
Q |
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| T |
40871775 |
cgttgcagaacctcatcatgtgtttcatatcataaacattttttccaaataatatt |
40871830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 360
Target Start/End: Original strand, 54703663 - 54703838
Alignment:
| Q |
185 |
aacttctaatccaaatactactccagcgtatttttcaaattctttgtgactgaaatgtgtttgcaccaacttatcaaaagtgtgccatgtcaacaagcta |
284 |
Q |
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|||||||||||| || | || |||||| ||||||| | ||| |||| |||||||||| ||||| | || | |||||| |||||||| || || ||| |
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| T |
54703663 |
aacttctaatccgaaaattattccagcatatttttggacttcattgttggtgaaatgtgtgtgcactattttctgaaaagtctgccatgttaataaacta |
54703762 |
T |
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| Q |
285 |
tcagatccagattgatgacactttccaacaacccgatccaccttgagtgtacttgcaacccgatcaagaccaccat |
360 |
Q |
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| T |
54703763 |
tcagatccagcttgatgtgactttccaatggcccgatccacgtcgagaatattagcaacccgttcaagaccaccat |
54703838 |
T |
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