View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_6 (Length: 574)
Name: NF20261_high_6
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Complemental strand, 36955431 - 36954879
Alignment:
| Q |
18 |
atcacttcaacggagacttacaagtgaaggatttcatcaaaacgttactacattacggtggttataaagaaatggcggatatactcgtaaacctaacgtc |
117 |
Q |
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| T |
36955431 |
atcacttcaacggagacttacaagtgaaggatttcatcaaaacgttactacattacggtggttataaagaaatggcggatatactcgtaaacctaacgtc |
36955332 |
T |
|
| Q |
118 |
cttagcgacggagatgagtcgtttagtctcggagggttatgttttaacggttttggcgccgaatgacgaagcaatggcgaagttaacgacggaggagtta |
217 |
Q |
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| T |
36955331 |
cttagcgacggagatgagtcgtttagtctcggagggttatgttttaacggttttggcgccgaatgacgaagcaatggcgaagttaacgacggaggagtta |
36955232 |
T |
|
| Q |
218 |
agtgaaccgggttcaccggaggagataatgtattaccatattatccctgagtatcaaacggaagagagtatgtataatgctgttaggagatttgggaagg |
317 |
Q |
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| T |
36955231 |
agtgaaccgggttcaccggaggagataatgtattaccatattatccctgagtatcaaacggaagagagtatgtataatgctgttaggagatttgggaagg |
36955132 |
T |
|
| Q |
318 |
ttaagtatgagactttgaggttgaagtataaggttgtggctcaggaagctgatgggtctgttaaatttggagatggtgatgggtcgggttatttgtttga |
417 |
Q |
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| T |
36955131 |
ttaggtatgagactttgaggttgaagtataaggttgtggctcaggaagctgatgggtctgttaaatttggagatggtgatgggtcgggttatttgtttga |
36955032 |
T |
|
| Q |
418 |
tccggatatttataccgatgggaggatttctgttcaagggattgatggggttttgtttcctgtgaaggag------------gtgccggtggagcgggtt |
505 |
Q |
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| T |
36955031 |
tccggatatttataccgatgggaggatttctgttcaagggattgatggggttttgtttcctatgaaggaggagaaagaagttgtgccggtggagcaggtt |
36954932 |
T |
|
| Q |
506 |
aaacccatttcgatgatgggtcaacccaggaaaggcgtcgttgaacacagaag |
558 |
Q |
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| T |
36954931 |
aaacccatttcgatgatgggtcaacccaggaaaggcgtcgttgaacacagaag |
36954879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 66 - 477
Target Start/End: Original strand, 17748904 - 17749315
Alignment:
| Q |
66 |
tacattacggtggttataaagaaatggcggatatactcgtaaacctaacgtccttagcgacggagatgagtcgtttagtctcggagggttatgttttaac |
165 |
Q |
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| T |
17748904 |
tacattatggaggttataatgagatggcggatattctggtgaacttaacgtcgttagcgacggagatgagtaggttagtatcagagggttatgttttaac |
17749003 |
T |
|
| Q |
166 |
ggttttggcgccgaatgacgaagcaatggcgaagttaacgacggaggagttaagtgaaccgggttcaccggaggagataatgtattaccatattatccct |
265 |
Q |
| |
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| T |
17749004 |
agttctagctccaaatgatgaagctatggctaagttaacaacggaccaattgagtgaaccgggttcaccggaacaaattatgtactatcatttgattcct |
17749103 |
T |
|
| Q |
266 |
gagtatcaaacggaagagagtatgtataatgctgttaggagatttgggaaggttaagtatgagactttgaggttgaagtataaggttgtggctcaggaag |
365 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||| ||| ||||||||| ||| | |||| |
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| T |
17749104 |
gagtatcaaactgaagagagtatgtataatgctgttagaagatttgggaaggtgaggtatgatactttgagattgcctcataaggttgatgctgaagaag |
17749203 |
T |
|
| Q |
366 |
ctgatgggtctgttaaatttggagatggtgatgggtcgggttatttgtttgatccggatatttataccgatgggaggatttctgttcaagggattgatgg |
465 |
Q |
| |
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| T |
17749204 |
ctgatgggtcggttaaattcgggcatggtgatggttcggcatatttgtttgacccggatatttatacggatgggaggatttctgtgcaagggattgatgg |
17749303 |
T |
|
| Q |
466 |
ggttttgtttcc |
477 |
Q |
| |
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||||||||||| |
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| T |
17749304 |
agttttgtttcc |
17749315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 38 - 462
Target Start/End: Complemental strand, 43480491 - 43480067
Alignment:
| Q |
38 |
caagtgaaggatttcatcaaaacgttactacattacggtggttataaagaaatggcggatatactcgtaaacctaacgtccttagcgacggagatgagtc |
137 |
Q |
| |
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||||| |||||||||||| |||| | || |||||||||||||| || |||||||||||||| || || ||||||||||| ||||| ||||| ||| ||| |
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| T |
43480491 |
caagtaaaggatttcatccaaactcttctccattacggtggttacaatgaaatggcggatattctggttaacctaacgtcgttagcaacggaaatgggtc |
43480392 |
T |
|
| Q |
138 |
gtttagtctcggagggttatgttttaacggttttggcgccgaatgacgaagcaatggcgaagttaacgacggaggagttaagtgaaccgggttcaccgga |
237 |
Q |
| |
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||||||| || || || ||||||||||| |||||||| || || || |||||||||||||| |||||||| || | ||| ||||| ||| ||||||| |
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| T |
43480391 |
gtttagtttctgaaggatatgttttaacagttttggcaccaaacgatgaagcaatggcgaaattaacgactgatcaattatcggaaccaggtgcaccgga |
43480292 |
T |
|
| Q |
238 |
ggagataatgtattaccatattatccctgagtatcaaacggaagagagtatgtataatgctgttaggagatttgggaaggttaagtatgagactttgagg |
337 |
Q |
| |
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|||| || || || ||||| || |||||||||||||| || |||||||||||||| || ||||| ||||||||||| ||| ||||| || ||| | |
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| T |
43480291 |
acagattatatactatcatataattcctgagtatcaaactgaggagagtatgtataacgccgttagaagatttgggaaaattagttatgatacgttgcgt |
43480192 |
T |
|
| Q |
338 |
ttgaagtataaggttgtggctcaggaagctgatgggtctgttaaatttggagatggtgatgggtcgggttatttgtttgatccggatatttataccgatg |
437 |
Q |
| |
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||| |||||||||| ||||||||| |||| || |||||||||||||| | |||||| || | ||||||||||||||| |||||||| ||||| | |
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| T |
43480191 |
ttgccccataaggttgttgctcaggaatctgacggttctgttaaatttggtcacggtgattcttctgcttatttgtttgatcctgatatttacaccgacg |
43480092 |
T |
|
| Q |
438 |
ggaggatttctgttcaagggattga |
462 |
Q |
| |
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| || ||||| |||||||| ||||| |
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| T |
43480091 |
gtagaatttccgttcaaggtattga |
43480067 |
T |
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