View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_8 (Length: 492)
Name: NF20261_high_8
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 44285071 - 44284594
Alignment:
| Q |
1 |
gagcagtgttacaagtgagagtgacactagtatgcttgtcaattaccggacacacctttaatttgaagtgctcgtgcggcatagtatgtatgaactataa |
100 |
Q |
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| T |
44285071 |
gagcagtgttacaagtgagagtgacactagtatgcttgtcaattaccggacacaactttaatttgaagtgctcgtgcggcatagtatgtatgaactataa |
44284972 |
T |
|
| Q |
101 |
tcggcggcatcaatattttaattaagaaattataaaaagtatnnnnnnngcaagtgaaatatttttcttactaacctctttgaactat-aagactgaata |
199 |
Q |
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| T |
44284971 |
tcggcggcatcaatattttaattaagaaattataagaagtataaaaaaagcaagtgaaatatttttcttactgacctctttgaactattaagactgaata |
44284872 |
T |
|
| Q |
200 |
ttgacatgaaaatttaaacaatattgttgaccatagaatgtacaagtcaaaagtaacaagcatgagataaagaatattccatcaattattcttcaaactt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44284871 |
ttgacatgaaaatttaaacaatattgttgaccatagaatgtacaagtcaaaagtaacaagcatgagataaagaatattccatcaattattcttcaaactt |
44284772 |
T |
|
| Q |
300 |
tacaagaattatactttgccattttgagcatcaatattcctaactggccccttaaaccattttcttgcatctaatacccaccaaagcattattagaccca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44284771 |
tacaagaattatactttgccattttgagcatcaatattcctaactggccccttaaaccattttcttgcatctaatacccaccaaagcattattagaccca |
44284672 |
T |
|
| Q |
400 |
aacctacccctaaagcaacaggtgcataattgaaagtatcccaagtaataggataaagagttggcaaaaggaatacag |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44284671 |
aacctacccctaaagcaacaggtgcataattgaaagtatcccaagtaataggataaagagttggcaaaaggaatacag |
44284594 |
T |
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