View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20261_low_1 (Length: 725)
Name: NF20261_low_1
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_1 |
 | |
|
| [»] scaffold0234 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 54 - 710
Target Start/End: Complemental strand, 12699942 - 12699285
Alignment:
| Q |
54 |
cccttcggctgactgtattcactgatgtgaacaatgtttgttgtaaagagcactaatattacgaaattgtcatcgcgtttatcttttccctcagtcatt- |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12699942 |
cccttcggctgactgtattcactgatgtgaacaatgtttgttgtaaagagcactaatattacgaaattgtcaccgcgtttatcttttccctcagtcattt |
12699843 |
T |
|
| Q |
153 |
agttccacagatgtgaaaactatttagtatctattattcctcttaggcatttcctcagctgatgtgaaaaccttctccaaagttctttcccttcaagtat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12699842 |
agttccacagatgtgaaaactatttagtatctattattcctcttaggcatttcctcagctggtgtgaaaaccttctccaaagttctttcccttcaagtat |
12699743 |
T |
|
| Q |
253 |
ttctccactgatgtgaatgccctgatgtcaaatgtaaattttctagtagtgtttcatcttttacatgagctatagagcgaaaattcccaaagctttgctt |
352 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12699742 |
ttctccactgatgtgaaagccctgatgtcaaatgtaaattttctagtagtgtttcatcttttacatgagctatagagcgaaaattcccaaagccttgctt |
12699643 |
T |
|
| Q |
353 |
ccactctttgaagccttcggaaacagagtaaccttaagctttggcaagaaatatcataacacagttgctcaggtaattgattgtgttgttcatttattgg |
452 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12699642 |
ccactctttgaagcctttggaaacacagtaaccttaagctttggcaagaaatatcataacacagttgctcaggtaattgattgtgttgttcatttattgg |
12699543 |
T |
|
| Q |
453 |
aagacttgaaactagcgaatccacatgttgcaacaactcgacattaaagcacagatcgacaactttatatcaatgttgctctgacaattatacctttatg |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
12699542 |
aagacttgaaactagcgaatccacatgttgcaacaactcgacattaaagcacggatcgacaactttatagcagcgttgctctgacaattatacctttatg |
12699443 |
T |
|
| Q |
553 |
gtcggttcacacggctgatcaagatgatgctgagtccaggttcaatttggtgacaaggcaattttgcggtggcagccaccatggcgttgtcatgttaaat |
652 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12699442 |
gtcggttcacaccgctgatcaagatgatgctgactccaggttcaatttggtgacaaggcaattttgcggtggcagccaccatggcgttgtcgtgttaaat |
12699343 |
T |
|
| Q |
653 |
gaaatgttgacgcatctttctttgatcaactaaaagaacaagtatatgcacttgtatc |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12699342 |
gaaatgttgacgcatctttctttgatcaactaaaagaacaagtatatgtacttgtatc |
12699285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 254
Target Start/End: Complemental strand, 5199 - 5049
Alignment:
| Q |
105 |
actaatattacgaaattgtcatcgcgtttatcttttccctcagtcattagttccacagatgtgaaaactatttagtatctattattcctcttaggcattt |
204 |
Q |
| |
|
||||||||||| |||||| || ||||||||| ||| |||||| |||||||||||| ||||| |||||| || | |||| | |||| || || ||||| |
|
|
| T |
5199 |
actaatattacaaaattgccaccgcgtttatgtttcccctcatgcattagttccactgatgtcaaaactcttgggcttctacttttcccctcagccattt |
5100 |
T |
|
| Q |
205 |
cctcagctgatgtgaaaaccttctccaaagt-tctttcccttcaagtattt |
254 |
Q |
| |
|
| ||| |||| |||||||||| |||||||| |||||||| ||| |||||| |
|
|
| T |
5099 |
cttcacctgaagtgaaaacctcatccaaagtatctttcccatcaggtattt |
5049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 24167224 - 24167159
Alignment:
| Q |
238 |
tttcccttcaagtatttctccactgatgtgaatgccctgatgtcaaatgtaaattttctagtagtg |
303 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| |||| ||| ||||||| |||||||||||||| |
|
|
| T |
24167224 |
tttcccctcatgtatttctccactgatgtgaaatccctattgttaaatgtatattttctagtagtg |
24167159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 9809427 - 9809556
Alignment:
| Q |
105 |
actaatattacgaaattgtcatcgcgtttatcttttccctcagtcattagttccacagatgtgaaaactatttagtatctattattcctcttaggcattt |
204 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||| |||||| |||||||||||| |||| |||||| | | |||||| |||| || || ||||| |
|
|
| T |
9809427 |
actaatattacgaaattgccaccgcgtttatgtttcccctcatgcattagttccacttatgtcaaaactcctgggcttctatttttcccctcagccattt |
9809526 |
T |
|
| Q |
205 |
cctcagctgatgtgaaaaccttctccaaag |
234 |
Q |
| |
|
| ||| |||| || |||||||| ||||||| |
|
|
| T |
9809527 |
cttcacctgaagtcaaaaccttgtccaaag |
9809556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 31713489 - 31713445
Alignment:
| Q |
259 |
actgatgtgaatgccctgatgtcaaatgtaaattttctagtagtg |
303 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
31713489 |
actgatgtgaaaaccctgatgtcaaatgtatattttctagtagtg |
31713445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University