View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_10 (Length: 467)
Name: NF20261_low_10
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 2633940 - 2633644
Alignment:
| Q |
8 |
gatataatagtgttgtaaatgcaaaatgtaataataaagtgataattcaaataaagaagggcaaagaatcctacatctcagaggtgttgtatatcccaaa |
107 |
Q |
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| T |
2633940 |
gatataatagtgttgtaaatgcaaaatgtaataataaagtgatgattcaaataaagaagggcaaagaatcctacatctcagaggtgttgtatatcccaaa |
2633841 |
T |
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| Q |
108 |
aatgaagagtaacttcattagccttggtcaattgttgaaaaagggctaacactatgaagatggaaaaggaagactaatcttgtaggaaggaaccattctc |
207 |
Q |
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| T |
2633840 |
aatgaagagtaacttcattagccttggtcaattgttgaaaaagggctaacactatgaagatggaaaaggaagactaatcttgtaggaaggaaccattctc |
2633741 |
T |
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| Q |
208 |
aatacaaagaactttcaaaattggaatcaatgcttgatggcaggtaaaagtgatgaaaaatggattttacatcataggtttacgaatttcaacttga |
304 |
Q |
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| T |
2633740 |
aatacaaagaactttcaaaattggaatcaatgcttgatggcaggtaaaagtgatgagaaatggattttgcatcaaaggtttacgaatttcaacttga |
2633644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 328 - 451
Target Start/End: Complemental strand, 2633644 - 2633521
Alignment:
| Q |
328 |
aaattccaatacctcttttagttgggattcgaatttcgaacattggcacactttattattataggagcctaacatctagtgctacattgacaacaatcat |
427 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2633644 |
aaattccaatacctcttttagttgggattcaaatttcgaacattggcacactttattattataggagcctaacatctagtgctacattcacaacaatcat |
2633545 |
T |
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| Q |
428 |
ataacaaaattgatgcataacatc |
451 |
Q |
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| T |
2633544 |
ataacaaaattgatacataacatc |
2633521 |
T |
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