View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20261_low_11 (Length: 420)

Name: NF20261_low_11
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20261_low_11
NF20261_low_11
[»] chr4 (12 HSPs)
chr4 (265-413)||(12224008-12224156)
chr4 (9-80)||(12224280-12224351)
chr4 (161-232)||(40179597-40179668)
chr4 (161-232)||(16073421-16073492)
chr4 (171-233)||(40006040-40006102)
chr4 (161-230)||(8423681-8423750)
chr4 (161-232)||(28964209-28964280)
chr4 (161-232)||(21945530-21945601)
chr4 (161-232)||(23292947-23293018)
chr4 (161-214)||(29205471-29205524)
chr4 (195-232)||(29205529-29205566)
chr4 (161-210)||(54580006-54580055)
[»] chr3 (12 HSPs)
chr3 (161-232)||(40993296-40993367)
chr3 (161-232)||(3631711-3631782)
chr3 (161-232)||(10954979-10955050)
chr3 (164-215)||(25093532-25093583)
chr3 (161-232)||(20503492-20503563)
chr3 (161-232)||(55401102-55401173)
chr3 (161-199)||(7614409-7614447)
chr3 (161-232)||(8789509-8789582)
chr3 (161-210)||(18426976-18427025)
chr3 (161-231)||(28918028-28918100)
chr3 (161-214)||(45451580-45451633)
chr3 (164-232)||(26492166-26492234)
[»] chr8 (8 HSPs)
chr8 (161-229)||(14134726-14134794)
chr8 (161-229)||(18407746-18407814)
chr8 (161-232)||(3025578-3025649)
chr8 (161-231)||(31557023-31557093)
chr8 (161-231)||(33405346-33405416)
chr8 (163-232)||(8293854-8293923)
chr8 (165-214)||(38079030-38079079)
chr8 (164-232)||(36450715-36450783)
[»] chr6 (9 HSPs)
chr6 (161-249)||(12627521-12627609)
chr6 (161-214)||(7265572-7265625)
chr6 (161-232)||(4877970-4878040)
chr6 (183-230)||(10339077-10339124)
chr6 (161-232)||(13360334-13360404)
chr6 (161-232)||(28152125-28152196)
chr6 (161-207)||(19040379-19040425)
chr6 (161-231)||(32978861-32978931)
chr6 (161-229)||(28715322-28715390)
[»] chr5 (7 HSPs)
chr5 (163-231)||(30502350-30502418)
chr5 (163-231)||(30542693-30542761)
chr5 (161-232)||(21576706-21576777)
chr5 (161-232)||(28588635-28588706)
chr5 (161-210)||(18421824-18421873)
chr5 (163-232)||(26312798-26312867)
chr5 (161-229)||(27932262-27932330)
[»] chr7 (9 HSPs)
chr7 (161-232)||(21880179-21880250)
chr7 (163-232)||(20549820-20549889)
chr7 (161-208)||(39138471-39138518)
chr7 (182-229)||(7438765-7438812)
chr7 (161-231)||(8234173-8234243)
chr7 (161-214)||(15680836-15680889)
chr7 (162-214)||(21864836-21864888)
chr7 (161-213)||(22484052-22484104)
chr7 (100-148)||(26329424-26329472)
[»] scaffold0050 (1 HSPs)
scaffold0050 (161-232)||(70305-70376)
[»] chr2 (11 HSPs)
chr2 (161-232)||(2438680-2438751)
chr2 (161-232)||(37411205-37411276)
chr2 (161-231)||(5367219-5367289)
chr2 (161-229)||(34993946-34994014)
chr2 (161-232)||(20242688-20242759)
chr2 (161-232)||(28596496-28596567)
chr2 (161-231)||(31808104-31808174)
chr2 (161-230)||(18570999-18571068)
chr2 (161-230)||(30404813-30404882)
chr2 (161-231)||(29176455-29176525)
chr2 (100-148)||(21782860-21782908)
[»] scaffold0022 (1 HSPs)
scaffold0022 (162-231)||(90871-90940)
[»] chr1 (12 HSPs)
chr1 (161-241)||(7353444-7353525)
chr1 (164-232)||(37598861-37598929)
chr1 (161-232)||(40258894-40258965)
chr1 (161-231)||(13997910-13997980)
chr1 (161-230)||(1815284-1815353)
chr1 (161-230)||(28674827-28674896)
chr1 (161-232)||(22515848-22515919)
chr1 (161-232)||(38078622-38078693)
chr1 (161-232)||(40181898-40181969)
chr1 (173-223)||(21530728-21530778)
chr1 (161-231)||(51410052-51410122)
chr1 (161-214)||(36878488-36878541)
[»] scaffold0697 (1 HSPs)
scaffold0697 (173-223)||(1683-1733)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 265 - 413
Target Start/End: Complemental strand, 12224156 - 12224008
Alignment:
Q  265 tgttaacggggaggagaacagagtaattgaagttgcaaattaaattactgagattaaaaagacttaccaagatttaaatgtacatcatcatcaatcttga 364  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12224156 tgttaacggggaggagaacagagtgattgaagttacaaattaaattactaagattaaaaagacttaccaagatttaaatgtacatcatcatcaatcttga 12224057  T
Q  365 cataaaaatcagcatcccacatagaagtaacagttgaaaagaataatct 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12224056 cataaaaatcagcatcccacatagaagtaacagttgaaaagaataatct 12224008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 12224351 - 12224280
Alignment:
Q  9 acatcatcaatattaaaattacttttgtgtctagaaccaattttacttcaaatagatccaaacaagtactaa 80  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12224351 acatcatacatattaaaattacttttgtgtctagaaccaattttacatcaaatagatccaaacaagtactaa 12224280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 40179668 - 40179597
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||||||  |||| ||||| ||||||||||||| |||||| |||||||||||||||||    
T  40179668 cataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatccg 40179597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 16073421 - 16073492
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||| ||||| |||||| ||||||||||||||| |||||||||||||||    
T  16073421 cataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccg 16073492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 40006040 - 40006102
Alignment:
Q  171 tgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccgt 233  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||   ||||||||||||||||    
T  40006040 tgtaattatatatgtcgatatcgaacacgacacatgtccgataccgagacacgcctaatccgt 40006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 8423750 - 8423681
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatc 230  Q
    |||||||||||||||||||| |||||| ||||| ||||||||  ||||||||||   |||||||||||||    
T  8423750 cataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatc 8423681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 28964280 - 28964209
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||  ||||| ||||||||||| |||||||||  |||||||||||||||    
T  28964280 cataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccg 28964209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 21945530 - 21945601
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||| ||||| ||| ||||||||||||||||    ||||||||||||||    
T  21945530 cataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatccg 21945601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 23293018 - 23292947
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||| |||||| |  ||||| ||||| ||||||||| ||||||||||   |||||||||||||||    
T  23293018 cataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccg 23292947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 29205471 - 29205524
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacac 214  Q
    |||||||||||||||||| |  ||||| ||| | ||||||||||||||||||||    
T  29205471 cataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacac 29205524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 29205529 - 29205566
Alignment:
Q  195 acacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||||||  |||||||||||||||    
T  29205529 acacgacacatgtccgacactgggacacgcctaatccg 29205566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 54580055 - 54580006
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccg 210  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||| ||||||    
T  54580055 cataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccg 54580006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 40993367 - 40993296
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||   |||||||||||||||    
T  40993367 cataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccg 40993296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 3631711 - 3631782
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||||| || |  ||||| |||||||||||||||||||| | |||||||||| ||||    
T  3631711 cataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccg 3631782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 10954979 - 10955050
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||| | |  ||||| ||||| ||||||||| |||||||||||  |||||||||||||||    
T  10954979 cataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccg 10955050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 25093532 - 25093583
Alignment:
Q  164 aattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacact 215  Q
    |||||||||||||||||| ||||| ||||| |||| ||||||||||||||||    
T  25093532 aattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacact 25093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 20503492 - 20503563
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||| ||| | |||||||||||||| |||||   |||||||||||||||    
T  20503492 cataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccg 20503563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 55401102 - 55401173
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||| |||||||||| |  ||||| ||||| ||||||||| ||||||||||   |||||||||||||||    
T  55401102 cataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccg 55401173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 7614447 - 7614409
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacg 199  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  7614447 cataattcagtataattatatatgtcggtgtcgaacacg 7614409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 8789582 - 8789509
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacg--acacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||| |||||||||||| ||||| ||||| |||||  ||||||||| |||||   |||||||||||||||    
T  8789582 cataattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccg 8789509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 18426976 - 18427025
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccg 210  Q
    |||||||| |||||||||||||||||| ||||| | ||||||| ||||||    
T  18426976 cataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccg 18427025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 28918028 - 28918100
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcga--acacgacacatgtccgacactatgacacgcctaatcc 231  Q
    |||||||||||||||||| |  ||||| |||||   ||||||||| |||||||||||  ||||||||||||||    
T  28918028 cataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatcc 28918100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 45451580 - 45451633
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacac 214  Q
    |||| |||||| |||| |||| ||||| ||||| ||||||||||||||||||||    
T  45451580 catacttcagtataataatatgtgtcggtgtcggacacgacacatgtccgacac 45451633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 26492234 - 26492166
Alignment:
Q  164 aattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||| |  | ||| ||||| |||||||||||||| ||||| | |||||| ||||||||    
T  26492234 aattcagtgtaattacaagtatcggtgtcggacacgacacatgtctgacaccaagacacgtctaatccg 26492166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 14134726 - 14134794
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaat 229  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| | ||||||||||||    
T  14134726 cataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaat 14134794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 18407746 - 18407814
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaat 229  Q
    |||||||||||||||||| |  |||||||| || |||||||||||||||||||||| ||||||||||||    
T  18407746 cataattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaat 18407814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 3025578 - 3025649
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||||  ||||  ||||| ||||||||| |||| |||||| ||||||| ||||||||    
T  3025578 cataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccg 3025649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 31557023 - 31557093
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    |||||||||||||||||| |  | ||| ||||  |||||||||||||||||||| | ||||||||||||||    
T  31557023 cataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatcc 31557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 33405416 - 33405346
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    ||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||||   |||||| |||||||    
T  33405416 cataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatcc 33405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 8293854 - 8293923
Alignment:
Q  163 taattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||| ||||| |||| |||| ||||||| || |||||   ||||| |||||||||    
T  8293854 taattcagtgtaattatatgtgtcggtgtcaaacatgacacatatctgacacctggacacacctaatccg 8293923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 38079030 - 38079079
Alignment:
Q  165 attcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacac 214  Q
    |||||||||||||||||  |||| ||||| ||||||| ||||||||||||    
T  38079030 attcagtgtaattatatgcgtcgatgtcggacacgacgcatgtccgacac 38079079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 36450783 - 36450715
Alignment:
Q  164 aattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||| |  ||| | ||||| ||||||| | |||||||||| | |||||||||||||||    
T  36450783 aattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccg 36450715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 12627609 - 12627521
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccgtaaaatatcagtgcttt 249  Q
    |||||||||||||||| |||| ||||| ||||| |||| |||||||||||||||   ||||| |||||||||  |||||||||||||||    
T  12627609 cataattcagtgtaataatatgtgtcgatgtcggacaccacacatgtccgacaccgagacactcctaatccgagaaatatcagtgcttt 12627521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 7265625 - 7265572
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacac 214  Q
    ||||||||||||||||||||| ||||| ||||| |||| | |||||||||||||    
T  7265625 cataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacac 7265572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 4877970 - 4878040
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||| ||| |||||| |  ||||| ||||| |||||||||||||||||||| | |||||||||||||||    
T  4877970 cataattaagtataattacaagtgtcggtgtcggacacgacacatgtccgacac-aggacacgcctaatccg 4878040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 10339124 - 10339077
Alignment:
Q  183 tgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatc 230  Q
    ||||| ||||| |||||||||||||||||||||  |||||||||||||    
T  10339124 tgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatc 10339077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 13360404 - 13360334
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||||| | ||| ||||  |||| ||| ||||||||||||  |||||||||||||||    
T  13360404 cataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgagacacgcctaatccg 13360334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 28152125 - 28152196
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||| ||||| ||||||||| ||||||||||   |||| ||||||||||    
T  28152125 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccg 28152196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 19040379 - 19040425
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgt 207  Q
    ||||||||||||||||||||| ||||  ||||| |||||||||||||    
T  19040379 cataattcagtgtaattatatgtgtctgtgtcggacacgacacatgt 19040425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 32978931 - 32978861
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    ||||||| |||||||||| |  ||||| ||||| ||||||||||||||||||||   |||||| |||||||    
T  32978931 cataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatcc 32978861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 28715322 - 28715390
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaat 229  Q
    |||||||||||||||||| |  ||||| ||||| ||||||||| ||| ||||||   ||||||||||||    
T  28715322 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaat 28715390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 30502418 - 30502350
Alignment:
Q  163 taattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||  |||| |||||||||    
T  30502418 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatcc 30502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 30542761 - 30542693
Alignment:
Q  163 taattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||  |||| |||||||||    
T  30542761 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatcc 30542693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 21576777 - 21576706
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||| ||||| ||||||||| |||| ||||||  |||||||||||||||    
T  21576777 cataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccg 21576706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 28588706 - 28588635
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||||| || ||||| | ||||||| |||||||    
T  28588706 cataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccg 28588635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 18421873 - 18421824
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccg 210  Q
    |||||| |||||||||||||| |||||  |||| ||||||||||||||||    
T  18421873 cataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtccg 18421824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 26312798 - 26312867
Alignment:
Q  163 taattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||| | ||| ||||| |||||| || |||| ||||| | ||||| |||||||||    
T  26312798 taattcagtgtaattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccg 26312867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 27932262 - 27932330
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaat 229  Q
    |||||||||||||||||| | || | | ||||| ||||||||| |||| ||||| | ||||||||||||    
T  27932262 cataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacacgcctaat 27932330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 21880179 - 21880250
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||| ||||| |||||||||||||||||||| | |||||||||||||||    
T  21880179 cataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccg 21880250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 20549820 - 20549889
Alignment:
Q  163 taattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||||||||||| |  |||||||||||||||    
T  20549820 taattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccg 20549889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 39138471 - 39138518
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtc 208  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  39138471 cataattcagtgtaattatatatgtcggtgtcggacacgatacatgtc 39138518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 7438765 - 7438812
Alignment:
Q  182 atgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaat 229  Q
    |||||| |||| |||||||||||||| |||||||| ||||||||||||    
T  7438765 atgtcggtgtcaaacacgacacatgtgcgacactaggacacgcctaat 7438812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 8234173 - 8234243
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    |||||||||||||| ||| |  || || ||||| ||||||||||||||||||||   ||||||||||||||    
T  8234173 cataattcagtgtagttacaagtgccggtgtcggacacgacacatgtccgacaccgagacacgcctaatcc 8234243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 15680836 - 15680889
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacac 214  Q
    ||||||| ||||||||||||  ||||| ||||| ||||||||| ||||||||||    
T  15680836 cataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacac 15680889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 21864836 - 21864888
Alignment:
Q  162 ataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacac 214  Q
    |||||| |||||||||| |  ||||||||||| ||||||||| ||||||||||    
T  21864836 ataatttagtgtaattacaagtgtcgctgtcggacacgacacgtgtccgacac 21864888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 22484052 - 22484104
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgaca 213  Q
    ||||||||||| ||||||||| ||||| ||||  ||| |||||||||||||||    
T  22484052 cataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgaca 22484104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 26329472 - 26329424
Alignment:
Q  100 acactggacacgacacaaacattgatacaccgacattgttaataatttg 148  Q
    ||||||||||||||||| ||| ||| || ||||||| ||||||||||||    
T  26329472 acactggacacgacacagacactgacacgccgacatcgttaataatttg 26329424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 70305 - 70376
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||| |||||||||| | |||| ||||||||||    
T  70305 cataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccg 70376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 2438751 - 2438680
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||| ||||| ||||||||||||||||||||   |||||||||||||||    
T  2438751 cataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccg 2438680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 37411276 - 37411205
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||| ||||||| ||||| ||||||||||||| | |||||||||||  |||||||||| ||||    
T  37411276 cataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacacgcctagtccg 37411205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 5367219 - 5367289
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| |   ||||||||||||||    
T  5367219 cataattcagtgtaattatatgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatcc 5367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 34994014 - 34993946
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaat 229  Q
    ||||||||| ||||||||||| ||||  ||||||||||||||  |||||||||||  ||||||||||||    
T  34994014 cataattcaatgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaat 34993946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 20242759 - 20242688
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||||| ||||| ||||| |||| |||| |||| ||||| | ||||||||| |||||    
T  20242759 cataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccg 20242688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 28596496 - 28596567
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||| ||||||||||||||  ||||| ||||| ||||||||| |||||||||||  ||||| |||||||||    
T  28596496 cataagtcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccg 28596567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 31808104 - 31808174
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    ||||||||||||||||||||| ||||  ||| ||||||||||||||| ||||||   ||||| ||||||||    
T  31808104 cataattcagtgtaattatatgtgtcagtgttgaacacgacacatgttcgacacctggacacacctaatcc 31808174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 18570999 - 18571068
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatc 230  Q
    ||||||||| |||||| |||| ||||  |||||||||||| |||| |||||||| | |||||||||||||    
T  18570999 cataattcaatgtaatcatatgtgtcagtgtcgaacacgatacatatccgacaccaggacacgcctaatc 18571068  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 30404882 - 30404813
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatc 230  Q
    |||||||||||||||||| |  |||||  |||| |||||||||||||||||||| | |||| ||||||||    
T  30404882 cataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacaccaggacatgcctaatc 30404813  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 29176525 - 29176455
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    ||||||||||||||||||||  ||| | ||| | ||||| |||||||||||||||  ||||| ||||||||    
T  29176525 cataattcagtgtaattataagtgttggtgttggacacggcacatgtccgacactgagacacacctaatcc 29176455  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 21782908 - 21782860
Alignment:
Q  100 acactggacacgacacaaacattgatacaccgacattgttaataatttg 148  Q
    ||||||||||||||||||||| ||| || |||||| || ||||||||||    
T  21782908 acactggacacgacacaaacactgacacgccgacactgctaataatttg 21782860  T

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Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 90871 - 90940
Alignment:
Q  162 ataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    |||||||||||||||||||||||||| ||||  |||| |||| |||||||||| |  |||||||||||||    
T  90871 ataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatcc 90940  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 7353525 - 7353444
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacac-atgtccgacactatgacacgcctaatccgtaaaatatc 241  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||  | |||||||||  ||||||||||||||| ||| ||||    
T  7353525 cataatttagtgtaattatatatgtcggtgtcgaacatgacacgttttccgacactgagacacgcctaatccgaaaattatc 7353444  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 37598861 - 37598929
Alignment:
Q  164 aattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||  ||||| ||||| ||||||||| ||||||||| |  |||||||||||||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccg 37598929  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 40258965 - 40258894
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    |||||||||||||||||| |  ||||| ||||  ||||||||| |||||||||| | |||||||||||||||    
T  40258965 cataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccg 40258894  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 13997910 - 13997980
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    ||||||||||||||||||||| ||||| ||| | | ||||||||||||  |||| |||||||| |||||||    
T  13997910 cataattcagtgtaattatatgtgtcggtgttggagacgacacatgtcaaacaccatgacacgtctaatcc 13997980  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 1815284 - 1815353
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatc 230  Q
    |||||||||||||||||| |  ||||| ||||  ||||||||||||||||||||   |||||||||||||    
T  1815284 cataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatc 1815353  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 28674827 - 28674896
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatc 230  Q
    ||||||||||| ||||||||||||| | ||||  ||||||||| ||||| |||||  |||||||||||||    
T  28674827 cataattcagtataattatatatgttggtgtcagacacgacacttgtccaacactgagacacgcctaatc 28674896  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 22515919 - 22515848
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||| |||||||||| |  ||||| ||||| ||||||||||| ||||||||   |||||||||||||||    
T  22515919 cataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccg 22515848  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 38078693 - 38078622
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||| |||||||| |  ||||| ||||| ||||||||||||| | |||| | |||||||||||||||    
T  38078693 cataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccg 38078622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 40181898 - 40181969
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatccg 232  Q
    ||||||||||||||||||||| | ||| ||||| |||| |||| ||||| ||||   |||||||||||||||    
T  40181898 cataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccg 40181969  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 21530728 - 21530778
Alignment:
Q  173 taattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacg 223  Q
    ||||||||  ||||| ||||| |||||||||||||||||||||| ||||||    
T  21530728 taattataagtgtcggtgtcggacacgacacatgtccgacactaggacacg 21530778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 51410052 - 51410122
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacgcctaatcc 231  Q
    |||||||||||||||||| |  ||||| ||||| ||||||||| | ||||||||   ||||||||||||||    
T  51410052 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatcc 51410122  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 36878488 - 36878541
Alignment:
Q  161 cataattcagtgtaattatatatgtcgctgtcgaacacgacacatgtccgacac 214  Q
    ||||||||||||||||||||  ||||| ||||  |||||| |||||||||||||    
T  36878488 cataattcagtgtaattataggtgtcggtgtctgacacgaaacatgtccgacac 36878541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 1683 - 1733
Alignment:
Q  173 taattatatatgtcgctgtcgaacacgacacatgtccgacactatgacacg 223  Q
    ||||||||  ||||| ||||| |||||||||||||||||||||| ||||||    
T  1683 taattataagtgtcggtgtcggacacgacacatgtccgacactaggacacg 1733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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