View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_14 (Length: 400)
Name: NF20261_low_14
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 381
Target Start/End: Complemental strand, 48593740 - 48593372
Alignment:
| Q |
9 |
gagagaagaagtaaagagaaataggagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactacttaatttatcacaaattccc |
108 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48593740 |
gagagaagaagtaaagagaaatagaagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactactt----tatcacaaattccc |
48593645 |
T |
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| Q |
109 |
ttttattaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatcca |
208 |
Q |
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| T |
48593644 |
ttttactaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatcca |
48593545 |
T |
|
| Q |
209 |
tatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacg |
308 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593544 |
tatcaatttttttgccttgatctaagatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacg |
48593445 |
T |
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| Q |
309 |
tagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttc |
381 |
Q |
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| T |
48593444 |
tagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttc |
48593372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 381
Target Start/End: Complemental strand, 48598351 - 48597983
Alignment:
| Q |
9 |
gagagaagaagtaaagagaaataggagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactacttaatttatcacaaattccc |
108 |
Q |
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| T |
48598351 |
gagagaagaagtaaagagaaatagaagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactactt----tatcacaaattccc |
48598256 |
T |
|
| Q |
109 |
ttttattaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatcca |
208 |
Q |
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| T |
48598255 |
ttttactaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatcca |
48598156 |
T |
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| Q |
209 |
tatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacg |
308 |
Q |
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| T |
48598155 |
tatcaatttttttgccttgatctaagatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacg |
48598056 |
T |
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| Q |
309 |
tagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttc |
381 |
Q |
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| T |
48598055 |
tagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttc |
48597983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 139 - 368
Target Start/End: Original strand, 23222890 - 23223119
Alignment:
| Q |
139 |
ttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaatct |
238 |
Q |
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|||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| | | |
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| T |
23222890 |
ttcaatcttgcaactggaatgcaaaaaagatcattggctctaggagcagtcaatccaggccgttcatccatatcgattgttttgccttgatctaataatt |
23222989 |
T |
|
| Q |
239 |
tacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctct |
338 |
Q |
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||| ||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||| || |||| || | |||||||||||| || || |||||||| |
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| T |
23222990 |
taccttcagagtcaagcatcttccactcaaagcattgtactaaagctccaatcacagtcggcaattcgcgcatggccaaaggcatccccgggcaacctct |
23223089 |
T |
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| Q |
339 |
ccttccagaaccaaatggcaacaactcaaa |
368 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23223090 |
ccttccagaaccaaatggcaacaactcaaa |
23223119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 97 - 381
Target Start/End: Original strand, 23230593 - 23230877
Alignment:
| Q |
97 |
tcacaaattcccttttattaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccag |
196 |
Q |
| |
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||||||||||||||||| |||| |||||||| ||| ||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
23230593 |
tcacaaattcccttttacaaaagctgaagaaaagtatttgggttcattcttgaaatcggaatacaaataagatcattggctctaggagcggtcaatccag |
23230692 |
T |
|
| Q |
197 |
gccgttcatccatatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagt |
296 |
Q |
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| | |||||||||||| | |||| ||||||| || |||| ||| || |||||||| ||||||||||||||||| |||||||| || | ||| || |
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| T |
23230693 |
gtctttcatccatatcgattgttttgcctcgatctaatattttaccttcggagtcaagcattttccactcaaagcattgcaccaaagccccgactacggt |
23230792 |
T |
|
| Q |
297 |
gggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttc |
381 |
Q |
| |
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||| ||||| || | |||||| ||||||||||| || ||||||||||||||||||||||| | ||||||| | || ||||||||| |
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| T |
23230793 |
gggcaattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtagcaactcatagtgatgccctttc |
23230877 |
T |
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