View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20261_low_16 (Length: 383)
Name: NF20261_low_16
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_16 |
 | |
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| [»] scaffold0216 (1 HSPs) |
| | |
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| [»] scaffold0807 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold0028 (2 HSPs) |
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| [»] scaffold0933 (1 HSPs) |
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Alignment Details
Target: scaffold0216 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 11759 - 12121
Alignment:
| Q |
13 |
atactcagtcagaatgtatatagtcatatacattattttgac--------gatatacttagtcaaagttgtaaatgtggtttggtactaatgcttgaaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
11759 |
atactcagtcagaatgtatatagtcatatacattattttgacaatatgttgatatacttagtcaaagttgtaaatgtaggttggtactaatgcttgaaat |
11858 |
T |
|
| Q |
105 |
tagtcttatttttagtttttctctaccaacgtttacatttatttttgctttgaccatgtgttaattacttcctaattacatggaaccaccaagc---ctg |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11859 |
tagccttatttttagtttttctctaccaacgtttacatttatttttgctttgaccatgtgttaattacttcctaattacatggaaccaccaagcgtgctg |
11958 |
T |
|
| Q |
202 |
ctcacaataagaaactcacggtccgttgtttttcacagtagaaaaagcacgtttataatagaaaacccacctctacacnnnnnnnnnnnnntttcatctt |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| |||| |
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|
| T |
11959 |
ctcacaataagaaactcacggtcctttgtttttcacagtagaaaaagcacgcttataatagaaaacccacctctatac--aaaaaaaataatttcctctt |
12056 |
T |
|
| Q |
302 |
atatagaaaataaactttagatttcttggttgtatctcatgtgtttatcagattggagttgttct |
366 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12057 |
atatagaaaataaactttagattttttggttgtatctcatgtgtttatcagattggagttgttct |
12121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 57 - 279
Target Start/End: Complemental strand, 5716 - 5494
Alignment:
| Q |
57 |
tatacttagtcaaagttgtaaatgtggtttggtactaatgcttgaaattagtcttatttttagtttttctctaccaacgtttacatttatttttgctttg |
156 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||| | ||||||||||| ||||||| ||||| ||||||| |||| ||||||||||| ||||||||| |
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|
| T |
5716 |
tatacttagttaaagttgtaaatgtgggttgatactagttcttgaaattagccttatttgtagttcttctctatcaacatttacatttatgtttgctttg |
5617 |
T |
|
| Q |
157 |
accatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaataagaaactcacggtccgttgtttttcacagtagaaaaagcacgttta |
256 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||| || |
|
|
| T |
5616 |
accatttgtgaattacttcctaattacaaggaaccaccaaccctgctcacaataagaaactcacagtcctttatttttcacagtagaaaaagcacacttg |
5517 |
T |
|
| Q |
257 |
taatagaaaacccacctctacac |
279 |
Q |
| |
|
| | ||| ||| ||||||||||| |
|
|
| T |
5516 |
ttagagagaactcacctctacac |
5494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 5470 - 5426
Alignment:
| Q |
305 |
tagaaaataaactttagatttcttggttgtatctcatgtgtttat |
349 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
5470 |
tagaaaataaagtttagatttcttgggtgcatctcatgtgtttat |
5426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 55 - 247
Target Start/End: Complemental strand, 4242980 - 4242789
Alignment:
| Q |
55 |
gatatacttagtcaaagttgtaaatgtggtttggtactaatgcttgaaattagtcttatttttagtttttctctaccaacgtttacatttatttttgctt |
154 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| ||||||| |||| ||||| |||||| |||||||||||| |
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|
| T |
4242980 |
gatatacttagtcaaagttgtaaatgtgggttggtattggtgcttgaaattagtcttatttgtagtttt-ctcttccaacatttacaattatttttgctt |
4242882 |
T |
|
| Q |
155 |
tgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaataagaaactcacggtccgttgtttttcacagtagaaaaa |
247 |
Q |
| |
|
||| |||||||||||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||||| | ||||||| || ||||||| |
|
|
| T |
4242881 |
tgatcatgtgttaattacttactaattataaggaaccaccaagtctgctcacaataagaaactcacggtccttcatttttcaaaggagaaaaa |
4242789 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 31207050 - 31206893
Alignment:
| Q |
55 |
gatatacttagtcaaagttgtaaatgtggtttggtactaatgcttgaaattagtcttatttttagtttttctctaccaacgtttacattta-tttttgct |
153 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||| |||||||||| | |||||||||||| ||| |||||||| |
|
|
| T |
31207050 |
gatatacttagtcaaagttgtaaatgtgggttggtattggtgcttgaaattagccttatttgtagtttttctttcccaacgtttacaattattttttgct |
31206951 |
T |
|
| Q |
154 |
ttgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaataa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| || |||||||||| |
|
|
| T |
31206950 |
ttgaccatgtgttaattacttcctaattataaggaaccaccaagtcttctcacaataa |
31206893 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 31210441 - 31210313
Alignment:
| Q |
55 |
gatatacttagtcaaagttgtaaatgtggtttggtactaatgcttgaaattagtcttatttttagtttttctctaccaacgtttacattta-tttttgct |
153 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||| |||||||||||| ||||| |||||| ||| |||||||| |
|
|
| T |
31210441 |
gatatacttagtcaaagttgtaaatgtgggttggtattggtgcttgaaattagccttatttgtagtttttctctcccaacatttacaattattttttgct |
31210342 |
T |
|
| Q |
154 |
ttgaccatgtgttaattacttcctaatta |
182 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
31210341 |
ttgatcatgtgttaattacttcctaatta |
31210313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 247
Target Start/End: Original strand, 32424684 - 32424880
Alignment:
| Q |
55 |
gatatacttagtcaaagttgtaaatgtg-gtt--tggtactaatgcttgaaattagtcttatttttagtttttctctaccaacgtttacatttatttt-t |
150 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| | ||||||||||||| ||||||| ||||||||||| |||| ||||||| ||||||| | |
|
|
| T |
32424684 |
gatatacttagtcaaagttgtaaatgtgagttggtggtattggtgcttgaaattagccttatttgtagtttttctcccccaatgtttacaattatttttt |
32424783 |
T |
|
| Q |
151 |
gctttgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaat--aagaaactcacggtccgttgtttttcacagtagaaaaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||| || || |||||||| ||||||||||| |||| | ||||||| |||||||||| |
|
|
| T |
32424784 |
gctttgaccatgtgttaattacttcctaattataaggaaccacc-agtcttctcacaataaaagaaactcac-gtccttcatttttcatagtagaaaaa |
32424880 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 27107098 - 27107166
Alignment:
| Q |
153 |
tttgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaataagaaactcacg |
221 |
Q |
| |
|
|||||||||||||| || |||||||||||| | |||||||| ||| || |||||||||||||||||||| |
|
|
| T |
27107098 |
tttgaccatgtgtttataacttcctaattataaggaaccacaaagtcttctcacaataagaaactcacg |
27107166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 448483 - 448614
Alignment:
| Q |
121 |
ttttctctaccaacgtttacatttatttttgctttgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaataag--aaactc |
218 |
Q |
| |
|
|||||||| |||| |||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
448483 |
ttttctcttccaatgtttactttaatttttgctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaaaactc |
448582 |
T |
|
| Q |
219 |
acggtccgttgtttttcacagtagaaaaagcac |
251 |
Q |
| |
|
||||||| || ||||| || |||||||||||| |
|
|
| T |
448583 |
acggtcctttatttttgac-ctagaaaaagcac |
448614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 4746885 - 4747037
Alignment:
| Q |
55 |
gatatacttagtcaaagttgtaaatgtggtttggtactaatgcttgaaattagtcttatttttagtttttctctaccaacgtttacatttattt--ttgc |
152 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| ||| ||||||| ||||||| || |||||||| || | | |||||||||||| |||| |
|
|
| T |
4746885 |
gatatacttagtcaaagttgtaaatatgggttggtactaatacttaaaattagccttatttgaag-ttttctctccctagggttacatttatttgcttgc |
4746983 |
T |
|
| Q |
153 |
tttgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcac |
206 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| | ||||||||||| | ||||||| |
|
|
| T |
4746984 |
tttgaccaagtgataattacttcctaattataaggaaccaccaaacttgctcac |
4747037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 44643145 - 44643305
Alignment:
| Q |
55 |
gatatacttagtcaaagttgtaaatgtggtttggtactaatgcttgaaattagtcttattttta------gtttttctctaccaacgtttacatttattt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | | |||| |||||| ||||||| || |||||||||| |||| | |||| |||||| |
|
|
| T |
44643145 |
gatatacttagtcaaagttgtaaatgtgggttggcatcagtgct---aattagccttatttatactcgtagtttttctctcccaatgattaccattattt |
44643241 |
T |
|
| Q |
149 |
t-tgctttgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaataa |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
44643242 |
tttgctttgaccatgtgttaattacttcctaattatatggaaccaccaagtcttctcacaataa |
44643305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 6668121 - 6667986
Alignment:
| Q |
117 |
tagtttttctctaccaacgtttacatttatttttgctttgaccatgtgttaattacttcctaattacatgg-aaccaccaagcctgctcacaataaga-- |
213 |
Q |
| |
|
|||||||| ||||||||| ||| | | ||||||| ||||||||||||||||||||||||||||||| | || || ||||||| ||| ||||| |||| |
|
|
| T |
6668121 |
tagtttttgtctaccaacattttcttctatttttactttgaccatgtgttaattacttcctaattataaggaaattaccaagcttgcacacaagaagaag |
6668022 |
T |
|
| Q |
214 |
--aactcacggtccgttgtttttcacagtagaaaaa |
247 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||| |
|
|
| T |
6668021 |
acaactcacggtcctttgttttgtacagtaggaaaa |
6667986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 127497 - 127566
Alignment:
| Q |
152 |
ctttgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaataagaaactcacg |
221 |
Q |
| |
|
||||||||||||||| || |||||||||||| | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
127497 |
ctttgaccatgtgtttataacttcctaattataaggaaccaccaagccttctcacaataagaaactcacg |
127566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 109915 - 109984
Alignment:
| Q |
152 |
ctttgaccatgtgttaattacttcctaattacatggaaccaccaagcctgctcacaataagaaactcacg |
221 |
Q |
| |
|
||||||||||||||| || |||||||||||| | ||||| |||||| || |||||||||||||||||||| |
|
|
| T |
109915 |
ctttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctcacaataagaaactcacg |
109984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 21346827 - 21346926
Alignment:
| Q |
117 |
tagtttttctctaccaacgtttacatttatttttgctttgaccatgtgttaattacttcctaattacatgg-aaccaccaagcctgctcacaataagaaa |
215 |
Q |
| |
|
|||||||||||||||||| ||| | | ||||||| ||||||| |||||||||||||||||| |||| | || ||| | ||||||||| ||||| |||||| |
|
|
| T |
21346827 |
tagtttttctctaccaacattttcttctattttttctttgacgatgtgttaattacttcctcattataaggaaactaacaagcctgcacacaagaagaaa |
21346926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0933 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0933
Description:
Target: scaffold0933; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 1391 - 1355
Alignment:
| Q |
146 |
tttttgctttgaccatgtgttaattacttcctaatta |
182 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
1391 |
ttttttctttgaccatgtgttaattacttcctgatta |
1355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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