View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_19 (Length: 373)
Name: NF20261_low_19
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_19 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 22962620 - 22962321
Alignment:
| Q |
10 |
aagaatattctaagaatgttgttaattaatattttaaattttgtgtggcagatactaagcaatggaacttaccagagcatcgaacatagagcaacagtaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22962620 |
aagaatattctaagaatgttgttaattaatattttaaattttgtgtggcagatactaagcaatggaacttaccagagcatcgaacatagggcaacagtaa |
22962521 |
T |
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| Q |
110 |
attcagagaaggagaggatctctgttgctgcatttcacagtcctcataggggtgatataggtccagcacccagtcttgttactcctaaaagtcctgcatt |
209 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
22962520 |
attcagaaaaggagaggatctctgttggtgcatttcacagtcctcataggggtgatataagtccagcacccagtcttgttactcctgaaagtcctgcatt |
22962421 |
T |
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| Q |
210 |
atttaaaaccatttctattgcagattacgtcaatggatacctttcaagcaagataaatgggaaatcatacttggatgttgttaggatccaaaattcgtga |
309 |
Q |
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| T |
22962420 |
atttaaaaccatttctattgcagattacgtcaatggatacctttcaagcaagataaatgggaaatcatacttggatggtgttaggatccaaaattcgtga |
22962321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 21321304 - 21321574
Alignment:
| Q |
35 |
ttaatattttaaattttgtgtggcagatactaagcaatggaacttaccagagcatcgaacatagagcaacagtaaattcagagaaggagaggatctctgt |
134 |
Q |
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|||||||||||||| | |||||||||||| | | |||||| | ||||| ||||| |||||||| ||||||| || ||||||||||| ||||||||||| |
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| T |
21321304 |
ttaatattttaaatgtggtgtggcagataatgaccaatgggatttaccgtagcattgaacatagggcaacagccaactcagagaaggaaaggatctctgt |
21321403 |
T |
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| Q |
135 |
tgctgcatttcacagtcctcataggggt---gatataggtccagcacccagtcttgttactcctaaaagtcctgcattatttaaaaccatttctattgca |
231 |
Q |
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| T |
21321404 |
tgcaggatttcacaatattcaaatgggcagagatctaggtccagcacccagccttgttactccggagactcctgcaatgttcaaaacaattactcttgaa |
21321503 |
T |
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| Q |
232 |
gattacgtcaatggatacctttcaagcaagataaatgggaaatcatacttggatgttgttaggatccaaaa |
302 |
Q |
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| T |
21321504 |
gaatacgttaatggatatcttgcaagcaagataaaggggaagtcatacttggatgttgtgaggatcaaaaa |
21321574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 22981588 - 22981499
Alignment:
| Q |
57 |
gcagatactaagcaatggaacttaccagagcatcgaacatagagcaacagtaaattcagagaaggagaggatctctgttgctgcatttca |
146 |
Q |
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| T |
22981588 |
gcagatattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagaggatatccattgctacatttca |
22981499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 22933882 - 22933952
Alignment:
| Q |
232 |
gattacgtcaatggatacctttcaagcaagataaatgggaaatcatacttggatgttgttaggatccaaaa |
302 |
Q |
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|||||| |||| |||||||||||| || || || | ||||||||||||||||||||||| ||||| ||||| |
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| T |
22933882 |
gattacatcaagggatacctttcacgccagctagaagggaaatcatacttggatgttgtaaggattcaaaa |
22933952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 296
Target Start/End: Complemental strand, 257476 - 257208
Alignment:
| Q |
31 |
ttaattaatattttaaattttgtgtggcagatactaagcaatggaacttaccagagcatcgaacatagagcaacagtaaattcagagaaggagaggatct |
130 |
Q |
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||||||||| | |||||| ||||||| ||| ||| || |||||||| ||||| ||||| |||||| |||||||||| ||||||||||||||||| |||| |
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| T |
257476 |
ttaattaatgtattaaatcttgtgtgccaggtacaaaccaatggaatttaccgaagcattgaacatcgagcaacagtgaattcagagaaggagagaatct |
257377 |
T |
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| Q |
131 |
ctgttgctgcatttcacagtcctcataggggtg---atataggtccagcacccagtcttgttactcctaaaagtcctgcattatttaaaaccatttctat |
227 |
Q |
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||||||| ||||||||| |||||||| ||| | ||||||||||| ||||||| |||||||||||| |||||||||||||||| ||||| || ||| |
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| T |
257376 |
ctgttgcagcatttcacgctcctcatatgggaggatatataggtccaacacccagccttgttactcctcaaagtcctgcattattcaaaactatgcctac |
257277 |
T |
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| Q |
228 |
tgcagattacgtcaatggatacctttcaagcaagataaatgggaaatcatacttggatgttgttaggat |
296 |
Q |
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| T |
257276 |
tgcagatttcctcaatggatacattgcaagtaggataaaggggaaatcgtacttggatgttgttaggat |
257208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 69 - 302
Target Start/End: Complemental strand, 215056 - 214820
Alignment:
| Q |
69 |
caatggaacttaccagagcatcgaacatagagcaacagtaaattcagagaaggagaggatctctgttgctgcatttcacagtcctcataggg---gtgat |
165 |
Q |
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|||||||| ||||| ||||| |||||| ||||||| || ||||| ||||||||||| ||||||||||||||||||||| |||||||| || | || |
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| T |
215056 |
caatggaatttaccgaagcattgaacatcgagcaacggtgaattcggagaaggagagaatctctgttgctgcatttcactctcctcatatgggcagatat |
214957 |
T |
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| Q |
166 |
ataggtccagcacccagtcttgttactcctaaaagtcctgcattatttaaaaccatttctattgcagattacgtcaatggatacctttcaagcaagataa |
265 |
Q |
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||||||||| ||||||| |||||||||||| ||||||||||||||| ||||| | ||| | |||||| | |||| ||||||||| |||||||||||| |
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| T |
214956 |
ataggtccaacacccagccttgttactcctcgaagtcctgcattattcaaaacagtggctacttcagatttcctcaagggataccttgcaagcaagataa |
214857 |
T |
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| Q |
266 |
atgggaaatcatacttggatgttgttaggatccaaaa |
302 |
Q |
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| ||||| ||||||||||||||| |||||||| |||| |
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| T |
214856 |
aggggaagtcatacttggatgttcttaggatcaaaaa |
214820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 36 - 299
Target Start/End: Original strand, 9759 - 10025
Alignment:
| Q |
36 |
taatattttaaattttgtgtggcagatactaagcaatggaacttaccagagcatcgaacatagagcaacagtaaattcagagaaggagaggatctctgtt |
135 |
Q |
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||||||| ||||| | |||||||||||| | | |||||||| |||| || || |||||| |||||||||| ||||||| |||||||||||| ||| | |
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| T |
9759 |
taatattgtaaatgtcgtgtggcagatattgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatg |
9858 |
T |
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| Q |
136 |
gctgcatttcacagtcctcataggggtg---atataggtccagcacccagtcttgttactcctaaaagtcctgcattatttaaaaccatttctattgcag |
232 |
Q |
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||| ||||||| | |||| ||| ||| | ||||||| ||| ||||||| ||||| |||||| ||||||||||||| || ||||| ||| || ||||| |
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| T |
9859 |
gctacatttcaaaatccttatatgggaggatatataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaacaattgctgctgcag |
9958 |
T |
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| Q |
233 |
attacgtcaatggatacctttcaagcaagataaatgggaaatcatacttggatgttgttaggatcca |
299 |
Q |
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||||| | || | | ||||||||||||||||| | |||||||||| ||||||| | |||||||||| |
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|
| T |
9959 |
attacttgaaagcacacctttcaagcaagatacaagggaaatcattcttggataattttaggatcca |
10025 |
T |
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