View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20261_low_2 (Length: 691)
Name: NF20261_low_2
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 123 - 681
Target Start/End: Complemental strand, 4509697 - 4509151
Alignment:
| Q |
123 |
ttgaatcatcactttagtcttttggaatgagacaattcgttccatgaaattaacaaaattttaaaataatctactcgaaacgaaattaataatctcgaaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4509697 |
ttgaatcatcactttagtcttttggaatgagacaattcgttccatgaaattaacaaaattttaaaataatctactcgaaacgaaattaataatctcgaaa |
4509598 |
T |
|
| Q |
223 |
agactaatatgatcaaccactatgaaacactcacatagacactagagacgtaactggcatgtagacacttgaaatttcttcaatgtgaagtatagggttt |
322 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4509597 |
agactaatatgatcaaccactacgaaacactcacatagacactagagacgtaactggcacgtagacacttgaaatttcttcaatgtgaagtatagggttt |
4509498 |
T |
|
| Q |
323 |
cataggccaatgattttcatttttcagtttcatgaatcatttttgaattgaaatttcgttaattacacaaacgaaagagaaagctacaatttgaggacta |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4509497 |
cataggccaatgattttcatttttcagtttcatgaatcatttttgaattgaaatttcgttaattacacaaacgaaagagaaagctacaatttgaggacta |
4509398 |
T |
|
| Q |
423 |
attagtgattcactttaaagagaaagctacgttacaatatgaatatgatgattatgattatgattatgattacaaattacaagtcacataacacacctag |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4509397 |
attagtgattcactttaaagagaaagctacgttacaatatgaatatgatgattatg------------attacaaattacaagtcacataacacacctag |
4509310 |
T |
|
| Q |
523 |
caacagtaacactccaaggagtaacaaactgatcctcagtggctctatcctcaccataaacatcccgaacactgccggcaatggtgggattatcatcaat |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4509309 |
caacagtaacactccaaggagtaacaaactgatcctcagtggctctatcctcaccataaacatcccgaacaccgccggcaatggtgggattatcatcaat |
4509210 |
T |
|
| Q |
623 |
gtcagccaccgtggaactagaaacattacttgtctccatgcaatgctgatgggtctgtg |
681 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4509209 |
gtcagccaccgtggaactagaaacattacttgtctccatgcaatgctgatgggtctgtg |
4509151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 4509802 - 4509741
Alignment:
| Q |
19 |
tctttctcggtgaaggccagtcctttattgaaatgtggatctctcaacaaagtatatccact |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4509802 |
tctttctcggtgaaggccagtcctttattgaaatgtggatctctcaacaaagtatatccact |
4509741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 517 - 586
Target Start/End: Original strand, 43435195 - 43435264
Alignment:
| Q |
517 |
acctagcaacagtaacactccaaggagtaacaaactgatcctcagtggctctatcctcaccataaacatc |
586 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
43435195 |
acctagcaacagaaacactccaaggagtcacaaagtgatcctcagtggccttatcctcgccataaacatc |
43435264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University