View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_23 (Length: 359)
Name: NF20261_low_23
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 316
Target Start/End: Complemental strand, 12984452 - 12984159
Alignment:
| Q |
23 |
gctagctagtagctaccataaagaagatacatgtatagtannnnnnngataaacagacacatgcatggccttaaatagataacaattttatgctagttaa |
122 |
Q |
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| T |
12984452 |
gctagctagtagctaccataaagaagatacatgtatagtatttttttgataaacagacacatgcatggccttaaatagataacaattttatgctagttaa |
12984353 |
T |
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| Q |
123 |
cattcttttaacatctttgttnnnnnnnntatatttatacatctatttacatagatttccaagtgaaaattagtgtagacatgtgcaaattaattcatac |
222 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12984352 |
cattcttttaacatctttgttaaaaaaaatatatttatacatctatttacatagatttccaagtgaaaattagtgtagacatgtgcaaattaattcatac |
12984253 |
T |
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| Q |
223 |
acttcctaaaggctaaagtgtaattgatccnnnnnnnnnnnnnnnnnnngtgttgctggtttgtgttatctagtcgtacatgggacatgatcta |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12984252 |
acttcctaaaggctaaagtgtaattgatccaaaaagataaaaagaaaaagtgttgctggtttgtgttatctagtcgtacatgggacatgatcta |
12984159 |
T |
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