View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_27 (Length: 317)
Name: NF20261_low_27
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 23012459 - 23012766
Alignment:
| Q |
12 |
cagagaaaataaggtcgttccggaacgtccaaatggtctttattatagaccacattcggttattaattatttttattttcatcaaccttccacgcccaat |
111 |
Q |
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| T |
23012459 |
cagagaaaataaggtcgttccgagacgtccaaatggtttttattatagaccacgttcgattaataattatttttattttcatcaaccttccacgcccaat |
23012558 |
T |
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| Q |
112 |
caaagtaactaactctgggggattgatattctatctatctttaattattaagtc--tctttannnnnnnncattctaaatttacgtataatatactcgtt |
209 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
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| T |
23012559 |
caaagtaactaactctgggggattggtattctatctatctttaattattaagtcttttttttttttttttcattctaaatttacgtataatatactcgtt |
23012658 |
T |
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| Q |
210 |
tcattcataattattagacaacttacaaaagaattgtttggaagaactttagttcaattactcatgaaaacaattattggttcagaactcaggataactc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
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| T |
23012659 |
tcattcataattattagacaacttacaaaagaattgtttggaagaactttagttcaattactcatgaaaacaactattggttctgaactccggataactc |
23012758 |
T |
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| Q |
310 |
taacaaaa |
317 |
Q |
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|||||||| |
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| T |
23012759 |
taacaaaa |
23012766 |
T |
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