View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_33 (Length: 294)
Name: NF20261_low_33
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 7632270 - 7632138
Alignment:
| Q |
33 |
agattagtgagagaatcttgaatggtgtgataaagaaagagggtaaaaaagattgggcaaagtagcgatcaagtaagatttgaagttaattaatacgagc |
132 |
Q |
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| T |
7632270 |
agattagtgagagactcttgaatggtgtgatgaagaaagagggtaaaaaagattgggtaaagtagcgatcacgtaatatttgaagttaattaatacgagc |
7632171 |
T |
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| Q |
133 |
ctttagatcaaaatcaataaatagataagattt |
165 |
Q |
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| T |
7632170 |
ctttagatcaaaataaataaatggataagattt |
7632138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 43252627 - 43252526
Alignment:
| Q |
65 |
aagaaagagggtaaaaaa-gattgggcaaagtagcgatcaagtaagatttgaagttaattaatacgagcctttagatcaaaatcaataaatagataagat |
163 |
Q |
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| T |
43252627 |
aagaaagagggtaagaaatgattggagaaagtagtgatcacttaagattttaagttaattaatacgagccattagatcaaaataaataaagggataagat |
43252528 |
T |
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| Q |
164 |
tt |
165 |
Q |
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|| |
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| T |
43252527 |
tt |
43252526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 280
Target Start/End: Complemental strand, 32219400 - 32219313
Alignment:
| Q |
197 |
atttattaaacacatgaatatcattt---tgacatgtttctactattttttgacaga-taaactttttgtagcagctagttatatatt |
280 |
Q |
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| T |
32219400 |
atttattaaacacatggatatcatttgactttcatgtttctactattttttgacaaaataaactttttgtagcagctaattatatatt |
32219313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 43065051 - 43065113
Alignment:
| Q |
91 |
aaagtagcgatcaagtaagatttgaagttaattaatacgagcctttagatcaaaatcaataaa |
153 |
Q |
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| T |
43065051 |
aaagtagtgatcacttaaggttttaagttaattaatacgagccattagatcaaaataaataaa |
43065113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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