View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_34 (Length: 293)
Name: NF20261_low_34
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 38577180 - 38576915
Alignment:
| Q |
18 |
gactcaacaaatttccaccattccatgcagtggcagagataacaattcccactgctgctcactggtctgagaagtacaaccatgcaatcaaggacatggc |
117 |
Q |
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| T |
38577180 |
gactcaacaaatttccaccattccatgcagtggcagagataacaattcccactgctgctcactggtctgagaagtacaaccatgcaatcaaggacatggc |
38577081 |
T |
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| Q |
118 |
tggaaagggttatagttttgttgggtatttacctttgattcctataaatgctatatctaaggcatttaagcagggagaagttaaggataagaaatcagaa |
217 |
Q |
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| T |
38577080 |
tggaaagggttatagttttgttgggtatttacctttgattcctataaatgctatatctaaggcatttaagcagggagaagttaaggataagaaatcagaa |
38576981 |
T |
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| Q |
218 |
taatcttattttgattgagttttacttttctaaaaaatttgcttccaggtgactttgttttctgtg |
283 |
Q |
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| T |
38576980 |
taatcttattctgattgagttttacttttctaaaaaatttgcttctaagtgactttgttttctgtg |
38576915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 38590183 - 38589921
Alignment:
| Q |
18 |
gactcaacaaatttccaccattccatgcagtggcagagataacaattcccactgctgctcactggtctgagaagtacaaccatgcaatcaaggacatggc |
117 |
Q |
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| T |
38590183 |
gactcaacaaatttccaccattccatgcagcagcagagatgacaattcccactgccgctcactggtctaagaaatacaaccatgcaatcaaggacatggc |
38590084 |
T |
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| Q |
118 |
tggaaagggttatagttttgttgggtatttacctttgattcctataaatgctatatctaaggcatttaagcagggagaagttaaggataagaaatcagaa |
217 |
Q |
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| T |
38590083 |
tggaaagggttatagttttgttgggtatttagctttgattcctattgatgatatatctaaggcatttaagaagggagaagttaaggataagaaatcaaaa |
38589984 |
T |
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| Q |
218 |
taatcttattttgattgagttttacttttctaaaaaatttgcttccaggtgactttgttttct |
280 |
Q |
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| T |
38589983 |
taatcttatactgattgagttttactcttctaaaaaatttgcttctaagcgactttgttttct |
38589921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 34651541 - 34651711
Alignment:
| Q |
31 |
tccaccattccatgcagtggcagagataacaattcccactgctgctcactggtctgagaagtacaaccatgcaatcaaggacatggctggaaagggttat |
130 |
Q |
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| T |
34651541 |
tccaccattccatgcagtggcagagatggcagttccaacagctgcacattggtcagaaaagtataaccatgttgttaaggacattactggaaagggatac |
34651640 |
T |
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| Q |
131 |
agttttgttgggtatttacctttgattcctataaatgctatatctaaggcatttaagcagggagaagttaa |
201 |
Q |
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| T |
34651641 |
acagtgtttggatatttgcctttgattcctattgatgaaatagccaaggcatttaaacagggggaagttaa |
34651711 |
T |
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