View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20261_low_35 (Length: 290)

Name: NF20261_low_35
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20261_low_35
NF20261_low_35
[»] chr1 (28 HSPs)
chr1 (13-274)||(15024194-15024455)
chr1 (13-274)||(15031535-15031796)
chr1 (28-225)||(15010126-15010323)
chr1 (17-238)||(15036133-15036354)
chr1 (113-225)||(15009910-15010022)
chr1 (113-225)||(15031008-15031120)
chr1 (13-238)||(15001222-15001445)
chr1 (13-238)||(15016228-15016453)
chr1 (116-238)||(15031139-15031261)
chr1 (116-238)||(14533622-14533744)
chr1 (125-238)||(14533775-14533888)
chr1 (118-238)||(15024086-15024206)
chr1 (118-238)||(15031427-15031547)
chr1 (115-238)||(15023942-15024065)
chr1 (115-238)||(15031283-15031406)
chr1 (114-210)||(15016112-15016208)
chr1 (116-216)||(15023820-15023920)
chr1 (116-216)||(15001100-15001200)
chr1 (125-216)||(15009703-15009794)
chr1 (143-238)||(15009825-15009920)
chr1 (125-216)||(15030801-15030892)
chr1 (143-238)||(15030923-15031018)
chr1 (114-216)||(14503117-14503219)
chr1 (143-238)||(15010041-15010136)
chr1 (125-219)||(14523510-14523604)
chr1 (125-167)||(15036060-15036102)
chr1 (51-88)||(15040019-15040056)
chr1 (114-162)||(14481606-14481654)
[»] scaffold0400 (5 HSPs)
scaffold0400 (113-238)||(11892-12017)
scaffold0400 (114-238)||(11748-11872)
scaffold0400 (184-238)||(11604-11658)
scaffold0400 (114-166)||(11532-11584)
scaffold0400 (114-147)||(5695-5728)
[»] scaffold0365 (5 HSPs)
scaffold0365 (113-238)||(12535-12660)
scaffold0365 (114-238)||(12391-12515)
scaffold0365 (184-238)||(12247-12301)
scaffold0365 (114-166)||(12175-12227)
scaffold0365 (114-147)||(6339-6372)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 15024455 - 15024194
Alignment:
Q  13 aaaattattaacatctaaatggagtgcttccaaatcgataagtctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtatttcc 112  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  15024455 aaaattattaacatctaaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtaattcg 15024356  T
Q  113 ctgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    || ||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||    
T  15024355 ctaagttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacctatggaag 15024256  T
Q  213 gtggaatttgtccggtgagagcatttttgtgaagagctaattgactcaattttgttaaattt 274  Q
    ||||||||||||||||||||||||||  |  ||||| ||||| |||||||||||||||||||    
T  15024255 gtggaatttgtccggtgagagcatttacgccaagagttaatttactcaattttgttaaattt 15024194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 15031796 - 15031535
Alignment:
Q  13 aaaattattaacatctaaatggagtgcttccaaatcgataagtctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtatttcc 112  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  15031796 aaaattattaacatctaaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtaattcg 15031697  T
Q  113 ctgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    || ||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||    
T  15031696 ctaagttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacctatggaag 15031597  T
Q  213 gtggaatttgtccggtgagagcatttttgtgaagagctaattgactcaattttgttaaattt 274  Q
    ||||||||||||||||||||||||||  |  ||||| ||||| |||||||||||||||||||    
T  15031596 gtggaatttgtccggtgagagcatttacgccaagagttaatttactcaattttgttaaattt 15031535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 15010323 - 15010126
Alignment:
Q  28 taaatggagtgcttccaaatcgataagtctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtatttccctgagttttgtcaaa 127  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15010323 taaatggagtacttccaaatcgataagcctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtatttcactgagttttgtcaaa 15010224  T
Q  128 tttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtggaatttgtcc 225  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| |  || | ||||||||||| |||||||||||||||||||||||||| ||||    
T  15010223 tttccaatagtggaaggaattggtccagagagattattttgtgaaagggaaaagtaatccaaattagtcaaattacctatggaaggtggaattggtcc 15010126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 15036354 - 15036133
Alignment:
Q  17 ttattaacatctaaatggagtgcttccaaatcgataagtctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtatttccctga 116  Q
    |||||| ||| ||| | |||| ||||||||||  |||| ||||||||||||| ||||||||||||||||||||||||  || |||||  || | | ||||    
T  15036354 ttattatcatataattcgagtacttccaaatccgtaagcctattcatttctgctggaatattctcagtgagagaatttgataaaagagttaatgcactga 15036255  T
Q  117 gttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtgg 216  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  15036254 gttttgtcaaattttcgatagtggaaggaattggtccagagagattatttagtgaaaggtgaatagaatccaaattaatcaaattacctatggaaggtgg 15036155  T
Q  217 aatttgtccggtgagagcattt 238  Q
    ||||| ||| ||||||||||||    
T  15036154 aatttttccagtgagagcattt 15036133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 15010022 - 15009910
Alignment:
Q  113 ctgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |  || | ||||||||||||||||||||||||||||||    
T  15010022 ctgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagggaaaagtaatccaaattaatcaaattacctatggaag 15009923  T
Q  213 gtggaatttgtcc 225  Q
    |||||||| ||||    
T  15009922 gtggaattggtcc 15009910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 15031120 - 15031008
Alignment:
Q  113 ctgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |  || | ||||||||||||||||||||||||||||||    
T  15031120 ctgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagggaaaagtaatccaaattaatcaaattacctatggaag 15031021  T
Q  213 gtggaatttgtcc 225  Q
    |||||||| ||||    
T  15031020 gtggaattggtcc 15031008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 15001445 - 15001222
Alignment:
Q  13 aaaattattaacatctaaatggagtgcttccaaatcgataagtctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtatttcc 112  Q
    |||||||||| ||  |||||||||| ||||||||||  |||| |||||||||||||||||||||||||||  || ||||||  |  |||||| || ||      
T  15001445 aaaattattatcagataaatggagtacttccaaatctgtaagcctattcatttctgttggaatattctcacggaaagaatttgagaaaagatataattta 15001346  T
Q  113 ctgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    | ||||||||||| |||||||| | |||||||||||||||| |||||| | ||   |  || || ||| | ||||||||| ||||| |||||||||||||    
T  15001345 cggagttttgtcatatttccaacagtggaaggaattggtccagagagacttttcatt--aaggtaaatagtatccaaattgatcaagttacctatggaag 15001248  T
Q  213 gtggaatttgtccggtgagagcattt 238  Q
    ||||||||||||| ||||||||||||    
T  15001247 gtggaatttgtccagtgagagcattt 15001222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 15016453 - 15016228
Alignment:
Q  13 aaaattattaacatctaaatggagtgcttccaaatcgataagtctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtatttcc 112  Q
    |||||||||| |||  |||| |||||||| ||||||| |||| ||||| ||||||||||||||||||| ||||| ||||||  |  |||||  || |       
T  15016453 aaaattattatcatacaaatcgagtgctttcaaatcggtaagcctattaatttctgttggaatattcttagtgaaagaatttgagaaaagagataatcta 15016354  T
Q  113 ctgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
     ||||||||||||  ||||||||| || ||||||||||| | ||||||||||| | ||||| || ||  | || ||||||||| |||||| ||||| |||    
T  15016353 atgagttttgtcatgtttccaatagtgaaaggaattggttcagagagattattgtatgaaaggtaaagagtatgcaaattaattaaattatctatgaaag 15016254  T
Q  213 gtggaatttgtccggtgagagcattt 238  Q
    |||||||||||||||||||| |||||    
T  15016253 gtggaatttgtccggtgagatcattt 15016228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 15031261 - 15031139
Alignment:
Q  116 agttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtg 215  Q
    ||||| || |||||||| ||| || ||||||||||||| ||||||||||||||||||| || |||   ||||||||| ||||| ||||||||||||||||    
T  15031261 agtttggttaaatttccgatagtgaaaggaattggtccagagagattattttgtgaaaggtcaatantatccaaattgatcaagttacctatggaaggtg 15031162  T
Q  216 gaatttgtccggtgagagcattt 238  Q
    |||||||||| ||||||||||||    
T  15031161 gaatttgtccagtgagagcattt 15031139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 116 - 238
Target Start/End: Original strand, 14533622 - 14533744
Alignment:
Q  116 agttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtg 215  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||| ||||||| ||||| || ||| | ||||||||||| ||  ||||||||||||||||    
T  14533622 agttttgtcaaatttccgatagtggaaggaattggtccagagagtttattttctgaaaggtaaatagtatccaaattaaccatgttacctatggaaggtg 14533721  T
Q  216 gaatttgtccggtgagagcattt 238  Q
    ||| |||||| ||||||||||||    
T  14533722 gaagttgtccagtgagagcattt 14533744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 14533775 - 14533888
Alignment:
Q  125 aaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtggaatttgtc 224  Q
    |||||||||| | |||||||||||||||  ||||| ||||||| ||||| || ||| | ||||||||||| ||  |||||||||||||||||||||||||    
T  14533775 aaatttccaacagtggaaggaattggtctagagagtttattttctgaaaggtcaatagtatccaaattaaccaggttacctatggaaggtggaatttgtc 14533874  T
Q  225 cggtgagagcattt 238  Q
    ||||||||||||||    
T  14533875 cggtgagagcattt 14533888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 15024206 - 15024086
Alignment:
Q  118 ttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtgga 217  Q
    |||||| |||||||| || |||||| |||||||||| ||||||| ||||| ||||| || ||| | ||||||||| |||||||| |||||||||||||||    
T  15024206 ttttgttaaatttccgatgatggaaagaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatcaaatttcctatggaaggtgga 15024107  T
Q  218 atttgtccggtgagagcattt 238  Q
    |||||||| |  |||||||||    
T  15024106 atttgtccagcaagagcattt 15024086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 15031547 - 15031427
Alignment:
Q  118 ttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtgga 217  Q
    |||||| |||||||| || |||||| |||||||||| ||||||| ||||| ||||| || ||| | ||||||||| |||||||| |||||||||||||||    
T  15031547 ttttgttaaatttccgatgatggaaagaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatcaaatttcctatggaaggtgga 15031448  T
Q  218 atttgtccggtgagagcattt 238  Q
    |||||||| |  |||||||||    
T  15031447 atttgtccagcaagagcattt 15031427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 15024065 - 15023942
Alignment:
Q  115 gagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggt 214  Q
    ||||||||| |||||||| ||  |||||||||||||||| ||||||| ||||  ||| | ||||||   ||||||||| ||||| |||||||||||||||    
T  15024065 gagttttgttaaatttccgatggtggaaggaattggtccagagagatgatttcttgataggtgaataagatccaaattgatcaagttacctatggaaggt 15023966  T
Q  215 ggaatttgtccggtgagagcattt 238  Q
    ||||||| ||||| ||||||||||    
T  15023965 ggaatttctccggagagagcattt 15023942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 15031406 - 15031283
Alignment:
Q  115 gagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggt 214  Q
    ||||||||| |||||||| ||  |||||||||||||||| ||||||| ||||  ||| | ||||||   ||||||||| ||||| |||||||||||||||    
T  15031406 gagttttgttaaatttccgatggtggaaggaattggtccagagagatgatttcttgataggtgaataagatccaaattgatcaagttacctatggaaggt 15031307  T
Q  215 ggaatttgtccggtgagagcattt 238  Q
    ||||||| ||||| ||||||||||    
T  15031306 ggaatttctccggagagagcattt 15031283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 15016208 - 15016112
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatgga 210  Q
    ||||||||||||||||||| ||| || |||||| |||||| |||| |||||||| ||||| || ||| | |||||||||||||||||||||||||||    
T  15016208 tgagttttgtcaaatttcctatagtgaaaggaagtggtccagagatattattttctgaaaggttaatagtatccaaattaatcaaattacctatgga 15016112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 15023920 - 15023820
Alignment:
Q  116 agttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtg 215  Q
    ||||| || |||||||| ||| || ||||||||||||| ||||||||||||||||||| || |||   ||||||||||||||||||||||||||| ||||    
T  15023920 agtttggttaaatttccgatagtgaaaggaattggtccagagagattattttgtgaaaggtcaatactatccaaattaatcaaattacctatggatggtg 15023821  T
Q  216 g 216  Q
    |    
T  15023820 g 15023820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 15001200 - 15001100
Alignment:
Q  116 agttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtg 215  Q
    ||||| || |||||||| ||| || ||||||||||||| |||||| |||||||||||| || ||| | ||| ||||||||||||||||||||||| ||||    
T  15001200 agtttcgttaaatttccgatagtgaaaggaattggtccagagagagtattttgtgaaaggtcaatagtatctaaattaatcaaattacctatggatggtg 15001101  T
Q  216 g 216  Q
    |    
T  15001100 g 15001100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 15009794 - 15009703
Alignment:
Q  125 aaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtgg 216  Q
    |||||||| ||| || ||||||||||||| |||||| |||||||||||| || ||| | ||| ||||||||||||||||||||||| |||||    
T  15009794 aaatttccgatagtgaaaggaattggtccagagagagtattttgtgaaaggtcaatagtatctaaattaatcaaattacctatggatggtgg 15009703  T

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Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 15009920 - 15009825
Alignment:
Q  143 ggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcattt 238  Q
    ||||||||||| ||||||| ||||  ||||| || |||   ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  15009920 ggaattggtccagagagatgatttcttgaaaggtcaataatatccaaattgatcaagttacctatggaaggtggaatttgtccagtgagagcattt 15009825  T

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Target: chr1; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 15030892 - 15030801
Alignment:
Q  125 aaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtgg 216  Q
    |||||||| ||| || ||||||||||||| |||||| |||||||||||| || ||| | ||| ||||||||||||||||||||||| |||||    
T  15030892 aaatttccgatagtgaaaggaattggtccagagagagtattttgtgaaaggtcaatagtatctaaattaatcaaattacctatggatggtgg 15030801  T

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Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 15031018 - 15030923
Alignment:
Q  143 ggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcattt 238  Q
    ||||||||||| ||||||| ||||  ||||| || |||   ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  15031018 ggaattggtccagagagatgatttcttgaaaggtcaataatatccaaattgatcaagttacctatggaaggtggaatttgtccagtgagagcattt 15030923  T

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Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 14503219 - 14503117
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaagg 213  Q
    ||||||| ||||||||||| ||| | |||||||||||||| ||||| ||||||||  ||| |  ||| |||| |||||||| ||||||||||||||| ||    
T  14503219 tgagtttcgtcaaatttccgatagttgaaggaattggtccagagaggttattttgaaaaaggataatagaattcaaattaaccaaattacctatggatgg 14503120  T
Q  214 tgg 216  Q
    |||    
T  14503119 tgg 14503117  T

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Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 15010136 - 15010041
Alignment:
Q  143 ggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcattt 238  Q
    ||||||||||| ||||||| ||||  ||||| |  |||   ||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  15010136 ggaattggtccagagagatgatttcttgaaagggaaatattatccaaattgatcaagttacctacggaaggtggaatttgtccagtgagagcattt 15010041  T

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Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 14523510 - 14523604
Alignment:
Q  125 aaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaaggtggaat 219  Q
    |||||||| ||| ||||||||| |||||| ||||| |||||||||||||||| ||| | ||||||||| |  |  |||||||| |||||||||||    
T  14523510 aaatttccgatagtggaaggaagtggtccagagagtttattttgtgaaaagtcaatagtatccaaattgacaaggttacctatagaaggtggaat 14523604  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 15036102 - 15036060
Alignment:
Q  125 aaatttccaataatggaaggaattggtcctgagagattatttt 167  Q
    |||||||||||| |||||||||||||||| ||||| |||||||    
T  15036102 aaatttccaatagtggaaggaattggtccagagagtttatttt 15036060  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 15040056 - 15040019
Alignment:
Q  51 taagtctattcatttctgttggaatattctcagtgaga 88  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  15040056 taagcctattcatttctgttggaatattcccagtgaga 15040019  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 14481654 - 14481606
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaattggtcctgagagatt 162  Q
    |||| |||||||| ||||| ||| |||||||||||||||| ||||||||    
T  14481654 tgaggtttgtcaagtttccgatagtggaaggaattggtccagagagatt 14481606  T

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Target: scaffold0400 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 12017 - 11892
Alignment:
Q  113 ctgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    |||||||||||||||||||| ||| ||| |||||||||||| ||| | ||||||  ||||| |  ||| |||||||| || | ||| ||||| |||||||    
T  12017 ctgagttttgtcaaatttccgatagtgggaggaattggtccagagggtttatttgttgaaatggtaatagaatccaagttgaccaagttaccaatggaag 11918  T
Q  213 gtggaatttgtccggtgagagcattt 238  Q
    ||||||||||||||||||||||||||    
T  11917 gtggaatttgtccggtgagagcattt 11892  T

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Target: scaffold0400; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 11872 - 11748
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattt-tgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    |||||||||||||||||   ||| || ||||||||||||| ||||| |||||| | ||||   | ||| ||||||||||| | ||| ||||||||||||     
T  11872 tgagttttgtcaaattttttatagtgcaaggaattggtcccgagagtttatttatatgaaggat-aatagaatccaaattgaccaagttacctatggaat 11774  T
Q  213 gtggaatttgtccggtgagagcattt 238  Q
    ||||||||||||||||||||||||||    
T  11773 gtggaatttgtccggtgagagcattt 11748  T

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Target: scaffold0400; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 11658 - 11604
Alignment:
Q  184 atccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcattt 238  Q
    ||||||||| | ||| |||  ||||||||||||||||||||||||||||||||||    
T  11658 atccaaattgaccaagttatatatggaaggtggaatttgtccggtgagagcattt 11604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 11584 - 11532
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattt 166  Q
    ||||||||||||||||||| ||| ||| |||||||||||| ||||| ||||||    
T  11584 tgagttttgtcaaatttccgatagtggtaggaattggtcccgagagtttattt 11532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 5728 - 5695
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaat 147  Q
    ||||||||||||||||||||||| ||||||||||    
T  5728 tgagttttgtcaaatttccaatagtggaaggaat 5695  T

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Target: scaffold0365 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 12660 - 12535
Alignment:
Q  113 ctgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattttgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    |||||||||||||||||||| ||| ||| |||||||||||| ||| | ||||||  ||||| |  ||| |||||||| || | ||| ||||| |||||||    
T  12660 ctgagttttgtcaaatttccgatagtgggaggaattggtccagagggtttatttgttgaaatggtaatagaatccaagttgaccaagttaccaatggaag 12561  T
Q  213 gtggaatttgtccggtgagagcattt 238  Q
    ||||||||||||||||||||||||||    
T  12560 gtggaatttgtccggtgagagcattt 12535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 12515 - 12391
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattt-tgtgaaaagtgaatggaatccaaattaatcaaattacctatggaag 212  Q
    |||||||||||||||||   ||| || ||||||||||||| ||||| |||||| | ||||   | ||| ||||||||||| | ||| ||||||||||||     
T  12515 tgagttttgtcaaattttttatagtgcaaggaattggtcccgagagtttatttatatgaaggat-aatagaatccaaattgaccaagttacctatggaat 12417  T
Q  213 gtggaatttgtccggtgagagcattt 238  Q
    ||||||||||||||||||||||||||    
T  12416 gtggaatttgtccggtgagagcattt 12391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 12301 - 12247
Alignment:
Q  184 atccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcattt 238  Q
    ||||||||| | ||| |||  ||||||||||||||||||||||||||||||||||    
T  12301 atccaaattgaccaagttatatatggaaggtggaatttgtccggtgagagcattt 12247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 12227 - 12175
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaattggtcctgagagattattt 166  Q
    ||||||||||||||||||| ||| ||| |||||||||||| ||||| ||||||    
T  12227 tgagttttgtcaaatttccgatagtggtaggaattggtcccgagagtttattt 12175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 6372 - 6339
Alignment:
Q  114 tgagttttgtcaaatttccaataatggaaggaat 147  Q
    ||||||||||||||||||||||| ||||||||||    
T  6372 tgagttttgtcaaatttccaatagtggaaggaat 6339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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