View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_4 (Length: 647)
Name: NF20261_low_4
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 14 - 647
Target Start/End: Complemental strand, 43021613 - 43020974
Alignment:
| Q |
14 |
catattacgtgaaaaagtacaatgacattttgaataaaaatttaaggattttaaaataaatgaaattaatgactagacttaatttggtcaaatttaaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021613 |
catattacgtgaaaaagtacaatgacattttgaataaaaatttaaggattttaaaataaatgaaattaatgactagacttaatttggtcaaatttaaaaa |
43021514 |
T |
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| Q |
114 |
tagcataactcaattggataaaatttgtttatgttaaatagggcttaaaaattattgagaggccaatgtccaacaaa-----atccaagttaaagtgtaa |
208 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43021513 |
tagcataactcgattggataaaatttgtttatgttaaatagggcttaaaaattattgagaggccaatgtccaacaaattaaaatccaagttaaagtgtaa |
43021414 |
T |
|
| Q |
209 |
tcaattaatgaaattaaacaaatgaaatccagagtggggtctgtaaaatagaagcagacacacaaagttggggcccttgtggaagaatctaaaaaaggtg |
308 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021413 |
tcaattaatgaaattaaacaaatgaaatgcagagtggggtctgaaaaatagaagcagacacacaaagttggggcccttgtggaagaatctaaaaaaggtg |
43021314 |
T |
|
| Q |
309 |
gataggagccaaattatgtttatatgttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaa |
408 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021313 |
gataggagccatattatgtttatatgttatattcgtttctgcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaa |
43021214 |
T |
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| Q |
409 |
gccatataaaactgctagtaaaaatgctatctctggctatacatgcccccttcaaaagtatccaaaatcttccataaaagtataataactgaatatcacc |
508 |
Q |
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| T |
43021213 |
gccatataaaactgctagtaaaaatgctatctctggccatatatgcccccttcaaaagtatccaaaatcttccataaaagtataataactgaatatcacc |
43021114 |
T |
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| Q |
509 |
ttttttaggcctt-gtttaaattttgaatacagtgtgaaaaggtatattttcaatttcaaattaaaccaatcatgtaatccgatcctattgctgtttatt |
607 |
Q |
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| T |
43021113 |
ttttttaggccttagtttaaattttgaatacagtgttaaaaggtatattttcaatttcaaattaaaccaatcatgtaatccgatcctattgctgtttatt |
43021014 |
T |
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| Q |
608 |
ttaattaattattacatcaattcttaagacttaagattct |
647 |
Q |
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| T |
43021013 |
ttaattaattattacatcaattcttaagacttaagattct |
43020974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 334 - 474
Target Start/End: Original strand, 13675644 - 13675784
Alignment:
| Q |
334 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
433 |
Q |
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|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |||||||||| |||||| | |||| |
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| T |
13675644 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaattttctggcataccaagaaaccatataaaaatgctagcacaaat |
13675743 |
T |
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| Q |
434 |
gctatctctggctatacatgcccccttcaaaagtatccaaa |
474 |
Q |
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| T |
13675744 |
gctatctctatctatatatgcccccttcaaaagtatccaaa |
13675784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 334 - 474
Target Start/End: Complemental strand, 19965075 - 19964935
Alignment:
| Q |
334 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
433 |
Q |
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| T |
19965075 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttttgggataccaagaaaccatataaaaatgctagcacaaat |
19964976 |
T |
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| Q |
434 |
gctatctctggctatacatgcccccttcaaaagtatccaaa |
474 |
Q |
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| T |
19964975 |
gctatctctatctatatatgcccccttcaaaagtatccaaa |
19964935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 436
Target Start/End: Complemental strand, 50805826 - 50805724
Alignment:
| Q |
334 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
433 |
Q |
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|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||| |||||||||| |||||| | |||| |
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| T |
50805826 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttctagcataccaagaaaccatataaaaatgctagcacaaat |
50805727 |
T |
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| Q |
434 |
gct |
436 |
Q |
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||| |
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| T |
50805726 |
gct |
50805724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 334 - 436
Target Start/End: Original strand, 50870051 - 50870153
Alignment:
| Q |
334 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
433 |
Q |
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|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | | | | |||||||||| |||||||||| |||||| | |||| |
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| T |
50870051 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaatttttttgtataccaagaaaccatataaaaatgctagcacaaat |
50870150 |
T |
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| Q |
434 |
gct |
436 |
Q |
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||| |
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| T |
50870151 |
gct |
50870153 |
T |
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