View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20261_low_40 (Length: 277)
Name: NF20261_low_40
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 3299394 - 3299149
Alignment:
| Q |
20 |
ttattctcctccaccaactcctctaattcctccttgaggttaataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3299394 |
ttattctcctccaccaactcctctaattcctccttgaggttaataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtg |
3299295 |
T |
|
| Q |
120 |
cattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggacc |
219 |
Q |
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||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3299294 |
catcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggacc |
3299195 |
T |
|
| Q |
220 |
aatatttggaccgaaagaagcagcaatatgactaggcagaataatc |
265 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3299194 |
aatatttggaccgaaagaagcagcaatatgactaggcagaataatc |
3299149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 3392287 - 3392042
Alignment:
| Q |
20 |
ttattctcctccaccaactcctctaattcctccttgaggttaataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3392287 |
ttattctcctccaccaactcctctaattcctccttgaggttaataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtg |
3392188 |
T |
|
| Q |
120 |
cattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggacc |
219 |
Q |
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||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3392187 |
catcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggacc |
3392088 |
T |
|
| Q |
220 |
aatatttggaccgaaagaagcagcaatatgactaggcagaataatc |
265 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3392087 |
aatatttggaccgaaagaagcagcaatatgactaggcagaataatc |
3392042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 61 - 265
Target Start/End: Original strand, 1163942 - 1164146
Alignment:
| Q |
61 |
aataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaag |
160 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||||| |
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| T |
1163942 |
aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
1164041 |
T |
|
| Q |
161 |
gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
1164042 |
gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa |
1164141 |
T |
|
| Q |
261 |
taatc |
265 |
Q |
| |
|
||||| |
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|
| T |
1164142 |
taatc |
1164146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 62 - 265
Target Start/End: Complemental strand, 1849823 - 1849620
Alignment:
| Q |
62 |
ataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaagg |
161 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||| ||||||||| |
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|
| T |
1849823 |
ataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaacagcgggtcaagg |
1849724 |
T |
|
| Q |
162 |
taaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaat |
261 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
1849723 |
taaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat |
1849624 |
T |
|
| Q |
262 |
aatc |
265 |
Q |
| |
|
|||| |
|
|
| T |
1849623 |
aatc |
1849620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 68 - 241
Target Start/End: Complemental strand, 38987548 - 38987375
Alignment:
| Q |
68 |
agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg |
167 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||||| | ||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||| |
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|
| T |
38987548 |
agaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatg |
38987449 |
T |
|
| Q |
168 |
gatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagca |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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|
| T |
38987448 |
gatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagca |
38987375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 68 - 241
Target Start/End: Complemental strand, 40418138 - 40417965
Alignment:
| Q |
68 |
agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg |
167 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||||| | ||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||| |
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|
| T |
40418138 |
agaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatg |
40418039 |
T |
|
| Q |
168 |
gatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagca |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40418038 |
gatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagca |
40417965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 39726261 - 39726115
Alignment:
| Q |
68 |
agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg |
167 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||||| | ||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||| |
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|
| T |
39726261 |
agaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatg |
39726162 |
T |
|
| Q |
168 |
gatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaata |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39726161 |
gatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata |
39726115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 39879663 - 39879517
Alignment:
| Q |
68 |
agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg |
167 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||||| | ||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||| |
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|
| T |
39879663 |
agaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatg |
39879564 |
T |
|
| Q |
168 |
gatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaata |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39879563 |
gatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata |
39879517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 39168770 - 39168603
Alignment:
| Q |
47 |
tcctccttgaggttaataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaaga |
146 |
Q |
| |
|
||||||| |||| |||| ||||||||||||||| ||||||||||| ||||| ||||||| | |||||||||||||||||||||| ||||| ||||||| |
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|
| T |
39168770 |
tcctcctggaggacaatatcaagaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaagg |
39168671 |
T |
|
| Q |
147 |
aacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaata |
214 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||| | |||||||||||||||| || || |||||| |
|
|
| T |
39168670 |
aaaaagcagtcaaggtaaatggatcaagtaaagtaatttttttggcaaccctagtgcatataacaata |
39168603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 39399750 - 39399601
Alignment:
| Q |
68 |
agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg |
167 |
Q |
| |
|
||||||| ||||| |||||||||| |||| ||||||| | ||||| |||||||||||||| ||||||| ||||||| || | |||||||||||||| |
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|
| T |
39399750 |
agaacaaaatatttgactaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatg |
39399651 |
T |
|
| Q |
168 |
gatcaagcaa---agtaaatgttttggcaaccctagtacaaatgacaata |
214 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||| || ||||||||| |
|
|
| T |
39399650 |
gatcaagcaaagtagtaatttttttggcaaccctagtgcatatgacaata |
39399601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 40596469 - 40596325
Alignment:
| Q |
76 |
atattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagc |
175 |
Q |
| |
|
|||||||||||||||| ||||| || |||||| ||||| |||||||||||||||||||| ||||||| ||||| ||||||| || ||||||| |
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|
| T |
40596469 |
atattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaaggtgaa--aatcaagc |
40596372 |
T |
|
| Q |
176 |
aaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatattt |
226 |
Q |
| |
|
||||||| | |||| |||||| ||||||||| |||||||| ||||||| |
|
|
| T |
40596371 |
aaagtaattcttttagcaacc----tacaaatgataataggactaatattt |
40596325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 66 - 245
Target Start/End: Original strand, 25912528 - 25912707
Alignment:
| Q |
66 |
caagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaa |
165 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||| |||||||| || ||||||||||| |
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|
| T |
25912528 |
caagaacaatatattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaa |
25912627 |
T |
|
| Q |
166 |
tggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaa |
245 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
25912628 |
tggatcaagtaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaa |
25912707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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