View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_44 (Length: 270)
Name: NF20261_low_44
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 10981934 - 10982185
Alignment:
| Q |
11 |
tcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaagtgttacaa |
110 |
Q |
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| T |
10981934 |
tcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaagtgttacaa |
10982033 |
T |
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| Q |
111 |
gatatgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaag |
210 |
Q |
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| T |
10982034 |
gatatgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagctttgaatgaag |
10982133 |
T |
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| Q |
211 |
gattatttattcctaatggtattccatccattttctgtactggacctttgat |
262 |
Q |
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| T |
10982134 |
gattatttattcctgatggtattccatccattttctgtactggacctttgat |
10982185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 10968099 - 10968235
Alignment:
| Q |
129 |
aaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatg |
228 |
Q |
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| T |
10968099 |
aaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatatattcctgatg |
10968198 |
T |
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| Q |
229 |
g---tattccatccattttctgtactggacctttgat |
262 |
Q |
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| T |
10968199 |
gaactactccatccattttttgtattggaccattgat |
10968235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 11002265 - 11002415
Alignment:
| Q |
115 |
tgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggatt |
214 |
Q |
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| T |
11002265 |
tgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaaggggt |
11002364 |
T |
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| Q |
215 |
atttattcctaatgg---tattccatccattttctgtactggacctttgat |
262 |
Q |
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| T |
11002365 |
atgtgttcctgatggaacaactccatccattttttgtattggacctttgat |
11002415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 10968012 - 10968070
Alignment:
| Q |
12 |
catatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctga |
70 |
Q |
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| T |
10968012 |
catacgcctcttcgaattcctgggttaccaaaaaatatttcaacagatgattaccctga |
10968070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 11002167 - 11002223
Alignment:
| Q |
11 |
tcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccc |
67 |
Q |
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| T |
11002167 |
tcatatgcctcttaaaattcccgggttaccaaagaacttttcgacagacgattaccc |
11002223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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