View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_47 (Length: 252)
Name: NF20261_low_47
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 56391958 - 56392193
Alignment:
| Q |
1 |
gtaaatgaacaatggaaggaagaacacaatgatcagataacacatctagaggtcttctaaatttaagcacactagaaggggttcaattaatcaagtaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
56391958 |
gtaaatgaacaatggaaggaagaacacaatgatcagataacacatctagaggtcttctaaagttaagcacactagaaggggttcgattaatcaagtaaat |
56392057 |
T |
|
| Q |
101 |
ggcagagtttacagcctcgccccacaaatgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtg-ctatttttcctctcagcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
56392058 |
ggcagagtttacagcctcgccccacaaatgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtgtctatttttcctctcggcc |
56392157 |
T |
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| Q |
200 |
actccattttgttggggtgagtaaggacatgtagtt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
56392158 |
actccattttgttggggtgagtaaggacatgtagtt |
56392193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 27516199 - 27516434
Alignment:
| Q |
1 |
gtaaatgaacaatggaaggaagaacacaatgatcagataacacatctagaggtcttctaaatttaagcacactagaaggggttcaattaatcaagtaaac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
27516199 |
gtaaatgaacaatggaaggaagaacacaatgatcagataacacatctagaggtcttctaaagttaagcacactagaaggggttcgattaatcaagtaaaa |
27516298 |
T |
|
| Q |
101 |
ggcagagtttacagcctcgccccacaaatgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtg-ctatttttcctctcagcc |
199 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27516299 |
ggcagagttaacagcctcaccccacaaatgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtgtctatttttcctctcagcc |
27516398 |
T |
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| Q |
200 |
actccattttgttggggtgagtaaggacatgtagtt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
27516399 |
actccattttgttggggtgagtaaggacatgtagtt |
27516434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40455938 - 40456173
Alignment:
| Q |
1 |
gtaaatgaacaatggaaggaagaacacaatgatcagataacacatctagaggtcttctaaatttaagcacactagaaggggttcaattaatcaagtaaac |
100 |
Q |
| |
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||||||||||||| | || |||||| ||||||||| || |||||||||||||||||||| ||| | |||||||||||||| | ||||||||| ||||| |
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| T |
40455938 |
gtaaatgaacaatagggggtagaacatgatgatcagacaatacatctagaggtcttctaaagttatgaacactagaaggggtccgattaatcaaataaac |
40456037 |
T |
|
| Q |
101 |
ggcagagtttacagcctcgccccacaaatgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtg-ctatttttcctctcagcc |
199 |
Q |
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||| |||| |||||||| ||||| ||||||||||||| ||||||||||||| |||||||| |||||| ||||||| || |||||||||||||||||| |
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| T |
40456038 |
tgcaaagttgacagcctcaccccataaatgagatggaatgttaccatctattaggagtgatcttgtcacctctaataaatgtctatttttcctctcagcc |
40456137 |
T |
|
| Q |
200 |
actccattttgttggggtgagtaaggacatgtagtt |
235 |
Q |
| |
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|||||||||||||| ||||| || |||||||||||| |
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| T |
40456138 |
actccattttgttgaggtgaatatggacatgtagtt |
40456173 |
T |
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