View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20261_low_53 (Length: 245)

Name: NF20261_low_53
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20261_low_53
NF20261_low_53
[»] chr7 (2 HSPs)
chr7 (141-237)||(1293416-1293512)
chr7 (10-125)||(1292129-1292246)
[»] chr4 (1 HSPs)
chr4 (11-58)||(35518681-35518728)
[»] chr5 (1 HSPs)
chr5 (10-60)||(35695231-35695281)
[»] chr8 (1 HSPs)
chr8 (20-61)||(40038946-40038987)
[»] chr2 (1 HSPs)
chr2 (27-64)||(33201204-33201241)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 1293416 - 1293512
Alignment:
Q  141 gatatgaatcataaaattgatatgaatgaattgttggataaatcatgaaatttcaacatatgatattgtattaaatttggctatacaaaacttctaa 237  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  1293416 gatatgaatcataaaattgatatgaataaatcgttggataaatcatgaaatttaaacatttgatattgtattaaatttgactatacaaaacttctaa 1293512  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 1292129 - 1292246
Alignment:
Q  10 atagcattcgtataagtaaatttgttaaagagtataattggaagtgaaaaaatcagtctataatcatannnnnnnnnnatatatagtatagatataaaaa 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| ||||||||||||||||    
T  1292129 atagcattcttataagtaaatttgttaaagagtataattggaagtgaaaaaatcagtctataatcatatattttctttatatacagtatagatataaaaa 1292228  T
Q  110 tag--ttagataagaatc 125  Q
    |||  |||||||||||||    
T  1292229 tagatttagataagaatc 1292246  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 35518728 - 35518681
Alignment:
Q  11 tagcattcgtataagtaaatttgttaaagagtataattggaagtgaaa 58  Q
    |||||||| |||||| ||||||||| |||| |||||||||||||||||    
T  35518728 tagcattcttataagaaaatttgtttaagaatataattggaagtgaaa 35518681  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 35695281 - 35695231
Alignment:
Q  10 atagcattcgtataagtaaatttgttaaagagtataattggaagtgaaaaa 60  Q
    ||||||||| |||| | ||||||||| ||| ||||||||||||||||||||    
T  35695281 atagcattcttatatgcaaatttgtttaagggtataattggaagtgaaaaa 35695231  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 40038946 - 40038987
Alignment:
Q  20 tataagtaaatttgttaaagagtataattggaagtgaaaaaa 61  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  40038946 tatatgtaaatttgtttaagtgtataattggaagtgaaaaaa 40038987  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 33201241 - 33201204
Alignment:
Q  27 aaatttgttaaagagtataattggaagtgaaaaaatca 64  Q
    |||||||||||||  |||||||||||||||||||||||    
T  33201241 aaatttgttaaaggatataattggaagtgaaaaaatca 33201204  T

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