View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_54 (Length: 243)
Name: NF20261_low_54
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 4635948 - 4636172
Alignment:
| Q |
1 |
tgggaatttcccattgggatgcagtgtaatttatttaacaaaatatgaaactacagataagagccaatacgactcagctggttgcttgaagtggttaaac |
100 |
Q |
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| T |
4635948 |
tgggaatttcccattgggatgcaatgtaatttacttaacaaaatatgaaactacagataagagccaatatgactcagctggttgcttgaagtggttaaac |
4636047 |
T |
|
| Q |
101 |
gaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgctactatcatctatgctgattactacaatg |
200 |
Q |
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| T |
4636048 |
gaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgctactataatctatgctgattactacaatg |
4636147 |
T |
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| Q |
201 |
ctcttttgccattatatcataatcc |
225 |
Q |
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| T |
4636148 |
ctcttttgccattatatcaaaatcc |
4636172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 4659109 - 4659322
Alignment:
| Q |
5 |
aatttcccattgggatgcagtgtaatttatttaacaaaatatgaaactacagataagagccaatacgactcagctggttgcttgaagtggttaaacgaat |
104 |
Q |
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||||||||||||||||| |||| | | ||||||||| |||||||| || ||||||| |||||| |||||| ||||||||||||||||||||| |||| |
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| T |
4659109 |
aatttcccattgggatgtagtgcagtccatttaacaacgtatgaaaccacggataagaaccaatatgactcatttggttgcttgaagtggttaaatgaat |
4659208 |
T |
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| Q |
105 |
ttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgctactatcatctatgctgattactacaatgctct |
204 |
Q |
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|| ||||||||||||| ||| | |||||| ||||| |||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
4659209 |
tttctgaattttataaccagaaactccaacatgagatacataggcttcgagtaattcatcctcatgctaatatcatctatgctgattattacaatgcagc |
4659308 |
T |
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| Q |
205 |
tttgccattatatc |
218 |
Q |
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| T |
4659309 |
attgccattatatc |
4659322 |
T |
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