View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_56 (Length: 241)
Name: NF20261_low_56
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 2898185 - 2898399
Alignment:
| Q |
17 |
aaagttgagaccaggcatccaattaggctgtattcccggtacatagataaagtttacgtgttatttcgtttcacacatgaggaggctcgggatctcattc |
116 |
Q |
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| T |
2898185 |
aaagttgagaccaggcatccaattaggctgcattcccggtacatagataaagtttatatgttatttcgtttcacacatgaggaggctcgggatctcattc |
2898284 |
T |
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| Q |
117 |
agaaatatctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggccaagagatgcaagaatgaggctcatgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2898285 |
agaaatatctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggccaagagatgcaagaatgaggctcatgaa |
2898384 |
T |
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| Q |
217 |
gcatgatgtccatct |
231 |
Q |
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|||||||||| |||| |
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| T |
2898385 |
gcatgatgtcaatct |
2898399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 44781546 - 44781338
Alignment:
| Q |
16 |
caaagttgagaccaggcatccaattaggctgtattcccggtacatagataaagtttacgtgttatttcgtttcacacatgaggaggctcgggatctcatt |
115 |
Q |
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|||||| |||||||||||||||||| |||||||||| || |||||||| |||| || | |||||||| ||||||||||||||||| |||||||||||| |
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| T |
44781546 |
caaagtggagaccaggcatccaattcggctgtattctcgatacatagaccgagttcacatcttatttcgcttcacacatgaggaggcccgggatctcatt |
44781447 |
T |
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| Q |
116 |
cagaaatatctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggccaagagatgcaagaatgaggctcatga |
215 |
Q |
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||| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44781446 |
cagcgatatctcaccgagcatcctgatcctaacaatgagaacatggtggggtacaataataagaagtgttggccaagagatgcaagaatgaggctcatga |
44781347 |
T |
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| Q |
216 |
agcatgatg |
224 |
Q |
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||||||||| |
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| T |
44781346 |
agcatgatg |
44781338 |
T |
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