View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20261_low_57 (Length: 240)

Name: NF20261_low_57
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20261_low_57
NF20261_low_57
[»] chr1 (15 HSPs)
chr1 (14-221)||(5682854-5683063)
chr1 (15-118)||(52285127-52285228)
chr1 (15-111)||(39277773-39277868)
chr1 (15-111)||(45822977-45823073)
chr1 (63-111)||(7714253-7714301)
chr1 (63-111)||(39277663-39277711)
chr1 (17-111)||(28990491-28990584)
chr1 (63-111)||(10394211-10394259)
chr1 (63-111)||(30049996-30050044)
chr1 (15-110)||(30050106-30050200)
chr1 (18-111)||(47422053-47422147)
chr1 (63-112)||(45822867-45822916)
chr1 (63-111)||(10719562-10719610)
chr1 (63-111)||(35814325-35814373)
chr1 (63-111)||(52285290-52285338)
[»] chr8 (12 HSPs)
chr8 (15-108)||(31933463-31933554)
chr8 (63-112)||(12654781-12654830)
chr8 (15-111)||(12654892-12654987)
chr8 (63-111)||(21015170-21015218)
chr8 (63-111)||(31933354-31933402)
chr8 (16-111)||(36194708-36194802)
chr8 (66-118)||(36194868-36194921)
chr8 (15-53)||(18847525-18847563)
chr8 (15-52)||(21015071-21015108)
chr8 (63-111)||(10134689-10134737)
chr8 (63-111)||(10134846-10134894)
chr8 (63-111)||(40832344-40832392)
[»] chr7 (16 HSPs)
chr7 (15-119)||(6000551-6000655)
chr7 (15-111)||(472679-472774)
chr7 (63-119)||(18417454-18417511)
chr7 (63-111)||(4133075-4133123)
chr7 (15-111)||(8463006-8463101)
chr7 (63-111)||(37691933-37691981)
chr7 (15-53)||(24485706-24485744)
chr7 (15-52)||(4132976-4133013)
chr7 (15-48)||(18417360-18417393)
chr7 (15-103)||(37691784-37691871)
chr7 (63-111)||(472804-472852)
chr7 (63-111)||(6000685-6000733)
chr7 (63-118)||(16962917-16962973)
chr7 (63-111)||(24485773-24485821)
chr7 (63-111)||(26041588-26041636)
chr7 (63-111)||(32389680-32389728)
[»] chr5 (5 HSPs)
chr5 (15-111)||(8417640-8417735)
chr5 (63-111)||(14662600-14662648)
chr5 (63-111)||(35463801-35463849)
chr5 (63-111)||(1983487-1983535)
chr5 (63-111)||(17115557-17115605)
[»] chr3 (15 HSPs)
chr3 (15-111)||(46452956-46453050)
chr3 (15-111)||(18734022-18734116)
chr3 (15-110)||(26247059-26247155)
chr3 (15-111)||(24244546-24244641)
chr3 (63-111)||(31071152-31071200)
chr3 (15-118)||(49220187-49220290)
chr3 (63-111)||(49220320-49220368)
chr3 (63-111)||(52857057-52857105)
chr3 (15-111)||(52857167-52857262)
chr3 (15-53)||(11047116-11047154)
chr3 (63-111)||(11047216-11047264)
chr3 (63-111)||(13301885-13301933)
chr3 (63-111)||(13312541-13312589)
chr3 (63-111)||(26246949-26246997)
chr3 (63-111)||(28253678-28253726)
[»] chr4 (19 HSPs)
chr4 (15-108)||(29430021-29430113)
chr4 (15-112)||(51024527-51024623)
chr4 (63-118)||(43099397-43099452)
chr4 (15-53)||(36215808-36215846)
chr4 (63-119)||(35016927-35016984)
chr4 (63-112)||(36215729-36215778)
chr4 (63-111)||(1113291-1113339)
chr4 (63-111)||(51399297-51399345)
chr4 (63-111)||(55620274-55620322)
chr4 (63-111)||(55627578-55627626)
chr4 (15-109)||(14251387-14251480)
chr4 (15-52)||(17254585-17254622)
chr4 (15-52)||(35016828-35016865)
chr4 (15-52)||(51399407-51399444)
chr4 (63-111)||(14251277-14251325)
chr4 (63-111)||(17254684-17254732)
chr4 (63-103)||(29430143-29430183)
chr4 (15-51)||(43099483-43099519)
chr4 (63-111)||(44304063-44304111)
[»] chr2 (7 HSPs)
chr2 (63-111)||(38978853-38978901)
chr2 (19-111)||(12261019-12261110)
chr2 (15-111)||(36065405-36065500)
chr2 (63-111)||(10373253-10373301)
chr2 (63-111)||(16581418-16581466)
chr2 (63-111)||(25945907-25945955)
chr2 (63-111)||(36065295-36065343)
[»] scaffold0220 (2 HSPs)
scaffold0220 (63-111)||(26044-26092)
scaffold0220 (63-111)||(26201-26249)
[»] chr6 (1 HSPs)
chr6 (63-111)||(959246-959294)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 5683063 - 5682854
Alignment:
Q  14 ataatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaa-gga 112  Q
    |||||||||||||||||||||||| |||||||| ||||||         ||||||||||| |||||||||||||| |||||||||||||||||||| |||    
T  5683063 ataatactaattaaataagttaagggactaaaaattaacgtttttttt-aattaaattaatagaaaggaccaaaacgatactttaaataacgttaaagga 5682965  T
Q  113 cctaaatag------tgttatttatagaacaaaatcaatacttgaaatagttaaagataaatgtgagataacaatatctatttattttctcttagtgtca 206  Q
    |||||||||      |||||||||||||| |||||| |||||  |    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5682964 cctaaatagatcttttgttatttatagaagaaaatcgatactcaa----gttaaagataaatgtgagataacaatatctatttattttctcttagtgtca 5682869  T
Q  207 ttgaggtgttcccgt 221  Q
    |||||||||||||||    
T  5682868 ttgaggtgttcccgt 5682854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 52285228 - 52285127
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaaggacc 114  Q
    ||||||||||||||||||||||| ||| ||||||||||          ||||||||||| |||||||| |||| ||||||||||||||| ||||||||||    
T  52285228 taatactaattaaataagttaagggaccaaaatttaac--attttttgaattaaattaacagaaaggatcaaactgatactttaaataaagttaaggacc 52285131  T
Q  115 taaa 118  Q
    ||||    
T  52285130 taaa 52285127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 39277773 - 39277868
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||||||||||| ||||||||||          ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  39277773 taatactaattaaataagttaagagaccaaaatttaac-atttttttaaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 39277868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 45822977 - 45823073
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||||||| ||| ||||||||||          ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  45822977 taatactaattaaataagttaagggaccaaaatttaacattttttttaaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 45823073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 7714301 - 7714253
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  7714301 aattaaattaacagaaaggaccaaactgatactttaaataaagttaagg 7714253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 39277711 - 39277663
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  39277711 aattaaattaacagaaaggaccaaactgatactttaaataaagttaagg 39277663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 28990491 - 28990584
Alignment:
Q  17 atactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||||  ||| |||||||||||         ||||||||||| ||||||||||||| ||||||||||||| | |||||||    
T  28990491 atactaattaaataagttaatggaccaaaatttaacgtttttttg-aattaaattaacagaaaggaccaaactgatactttaaatgaagttaagg 28990584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 10394259 - 10394211
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  10394259 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 10394211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 30050044 - 30049996
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  30050044 aattaaattaacagaaaagaccaaactgatactttaaataaagttaagg 30049996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 30050106 - 30050200
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaag 110  Q
    ||||||||||||||||||||||  ||| ||||||||||          ||||||||||| ||||| ||||||| ||||||||||||||| ||||||    
T  30050106 taatactaattaaataagttaatggaccaaaatttaac-tttctttttaattaaattaacagaaatgaccaaattgatactttaaataaagttaag 30050200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 47422053 - 47422147
Alignment:
Q  18 tactaattaaataagttaagagactaaaatttaacgnnnnnnnnn-aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||||||||||| || ||||||||||||          ||||||||||| ||||| |||||||  |||||||||||||| |||||||    
T  47422053 tactaattaaataagttaagggattaaaatttaacgttttttttataattaaattaacagaaatgaccaaaccgatactttaaataaagttaagg 47422147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 45822916 - 45822867
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagga 112  Q
    ||||||||||| ||||||||| ||  ||||||||||||||| ||||||||    
T  45822916 aattaaattaacagaaaggactaagctgatactttaaataaagttaagga 45822867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 10719562 - 10719610
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  10719562 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 10719610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 35814325 - 35814373
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||  |||||||| |||| ||||||||||||||| |||||||    
T  35814325 aattaaattatcagaaaggatcaaactgatactttaaataaagttaagg 35814373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 52285290 - 52285338
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||| |||||||  |||||||||||||| |||||||    
T  52285290 aattaaattaacagaaatgaccaaacggatactttaaataaagttaagg 52285338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 31933463 - 31933554
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgtta 108  Q
    ||||||||||||||||||||||||||| |||||||||||         ||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  31933463 taatactaattaaataagttaagagaccaaaatttaacg--ttttttgaattaaattaagagaaaggaccaaattgatactttaaataaagtta 31933554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 12654830 - 12654781
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagga 112  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  12654830 aattaaattaacagaaaggaccaaactgatactttaaataaagttaagga 12654781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 12654892 - 12654987
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||||||||||| |||||||||||         ||||||||| | | |||||||||||  |||||||||||||| |||||||    
T  12654892 taatactaattaaataagttaagagaccaaaatttaacg-ttcttttgaattaaattgacataaaggaccaaacagatactttaaataaagttaagg 12654987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 21015170 - 21015218
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||||||||||||||||  |||||||||||||| |||||||    
T  21015170 aattaaattaaaagaaaggaccaaaccgatactttaaataaagttaagg 21015218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 31933402 - 31933354
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  31933402 aattaaattaacagaaaggaccaaagtgatactttaaataaagttaagg 31933354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 36194802 - 36194708
Alignment:
Q  16 aatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||||||||||||| ||| ||||||||||          ||||||||||| |||||||| |||| ||||||||||||||| |||||||    
T  36194802 aatactaattaaataagttaagggaccaaaatttaac-ctttttttgaattaaattaatagaaaggatcaaactgatactttaaataaagttaagg 36194708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 36194868 - 36194921
Alignment:
Q  66 taaattaaaagaaaggaccaaaatgatactttaaataacgtt-aaggacctaaa 118  Q
    |||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||    
T  36194868 taaattaacagaaaggaccaaactgatactttaaataaagttaaaggacctaaa 36194921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 18847525 - 18847563
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacg 53  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  18847525 taatactaattaaataagttaagggaccaaaatttaacg 18847563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 21015108 - 21015071
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaac 52  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  21015108 taatactaattaaataagttaagggaccaaaatttaac 21015071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 10134737 - 10134689
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  10134737 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 10134689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 10134846 - 10134894
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||| ||||| |||||||    
T  10134846 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagg 10134894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 40832344 - 40832392
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||| ||||| |||||||    
T  40832344 aattaaattaacagaaaggaccaaaccgatacttttaataaagttaagg 40832392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 6000655 - 6000551
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaa-ggac 113  Q
    ||||||||||||||||||||||  ||| |||||||||||         ||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||    
T  6000655 taatactaattaaataagttaatggaccaaaatttaacgttttttta-aattaaattaacagaaaggaccaaactgatactttaaataaagttaagggac 6000557  T
Q  114 ctaaat 119  Q
    ||||||    
T  6000556 ctaaat 6000551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 472774 - 472679
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||||||||| |||| ||| ||||||||||          ||||||||||| ||||||||||||| ||||||||| ||||| |||||||    
T  472774 taatactaattaaataagataagggaccaaaatttaac-atttttttgaattaaattaacagaaaggaccaaactgatactttcaataaagttaagg 472679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 18417454 - 18417511
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaa-ggacctaaat 119  Q
    |||||||||||  |||||||||||| ||||||||||||||| ||||| ||||||||||    
T  18417454 aattaaattaatggaaaggaccaaattgatactttaaataaagttaagggacctaaat 18417511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 4133075 - 4133123
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||| ||| ||||||||||| |||||||    
T  4133075 aattaaattaacagaaaggaccaaactgacactttaaataaagttaagg 4133123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 8463006 - 8463101
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||||||||||||| |||| |||||||||||         ||||||||||| ||||  ||||||| || |||||||||||| |||||||    
T  8463006 taatactaattaaataagttaaaagaccaaaatttaacg-ttgttttgaattaaattaacagaagagaccaaactgttactttaaataaagttaagg 8463101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 37691933 - 37691981
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||  |||||||||||| ||||||||||||||| |||||||    
T  37691933 aattaaattaactgaaaggaccaaactgatactttaaataaagttaagg 37691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 24485744 - 24485706
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacg 53  Q
    |||||||||||||||||||||||| || |||||||||||    
T  24485744 taatactaattaaataagttaagaaaccaaaatttaacg 24485706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 4133013 - 4132976
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaac 52  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  4133013 taatactaattaaataagttaagggaccaaaatttaac 4132976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 18417393 - 18417360
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatt 48  Q
    ||||||||||||||||||||||||||| ||||||    
T  18417393 taatactaattaaataagttaagagaccaaaatt 18417360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 37691871 - 37691784
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataa 103  Q
    ||||||||||||||||||||||  ||| ||||||||||          ||||||||||| ||||| ||||||| |||||||||||||||    
T  37691871 taatactaattaaataagttaatggaccaaaatttaac-ttttttttgaattaaattaacagaaaagaccaaagtgatactttaaataa 37691784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 472804 - 472852
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  472804 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 472852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 6000685 - 6000733
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||| ||  |||||||||||||| |||||||    
T  6000685 aattaaattaagagaaaggacctaacggatactttaaataaagttaagg 6000733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 16962973 - 16962917
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaa-ggacctaaa 118  Q
    ||||||||||| | |||| | |||||||||||||||||||| ||||| |||||||||    
T  16962973 aattaaattaacataaagaatcaaaatgatactttaaataaagttaatggacctaaa 16962917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 24485773 - 24485821
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  || ||||||||||| |||||||    
T  24485773 aattaaattaatagaaaggaccaaaccgacactttaaataaagttaagg 24485821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 26041636 - 26041588
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||| ||||| |||||||    
T  26041636 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagg 26041588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 32389680 - 32389728
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| | |||||| |||| ||||||||||||||| |||||||    
T  32389680 aattaaattaacaaaaaggatcaaactgatactttaaataaagttaagg 32389728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 8417735 - 8417640
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||||||||||| |||||||||||         ||||||||||| ||||| ||||| | ||||||||||||||| |||||||    
T  8417735 taatactaattaaataagttaagagaccaaaatttaacg-ttcttttgaattaaattaacagaaatgaccagactgatactttaaataaagttaagg 8417640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 14662600 - 14662648
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  14662600 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 14662648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 35463801 - 35463849
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  35463801 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 35463849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 1983487 - 1983535
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||| ||||| |||||||    
T  1983487 aattaaattaacagaaaggaccaaaccgatacttttaataaagttaagg 1983535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 17115557 - 17115605
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||| ||||||||| ||| | |||||||    
T  17115557 aattaaattaacagaaaggaccaaactgatactttcaatcaagttaagg 17115605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 46453050 - 46452956
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||||||||||| |||||||||||         ||||||||||| |||| |||||||| || |||||||||||| |||||||    
T  46453050 taatactaattaaataagttaagagaccaaaatttaacg--tatttttaattaaattaacagaagggaccaaactgttactttaaataaagttaagg 46452956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 18734116 - 18734022
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||||||| ||| ||||||||||          ||||||||||| |||||| || ||| ||||||||||||||| |||||||    
T  18734116 taatactaattaaataagttaagggaccaaaatttaac--tttctttgaattaaattaacagaaagaacgaaactgatactttaaataaagttaagg 18734022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 26247059 - 26247155
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnn-aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaag 110  Q
    |||||||||||||||||| |||| ||| |||||||||||          ||||||||||| ||||||||||||| ||||||||| ||||| ||||||    
T  26247059 taatactaattaaataagataagggaccaaaatttaacgttttttttttaattaaattaacagaaaggaccaaactgatactttcaataaagttaag 26247155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 24244641 - 24244546
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||||||||| |||||||| |||||||||||         ||||||||||| | |||||||||||  |||||||| ||||| |||||||    
T  24244641 taatactaattaaataagataagagaccaaaatttaacg-tttttttgaattaaattaatataaaggaccaaaccgatactttcaataaagttaagg 24244546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 31071152 - 31071200
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  31071152 aattaaattaacagaaatgaccaaactgatactttaaataaagttaagg 31071200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 49220290 - 49220187
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgtt-aaggac 113  Q
    ||||||||||||||||||||||| ||| |||||||||||         ||||||||||| |||||| ||||||  |||| ||||||||| ||| ||||||    
T  49220290 taatactaattaaataagttaagggaccaaaatttaacg-tttttttgaattaaattaacagaaagcaccaaaccgataatttaaataaagttaaaggac 49220192  T
Q  114 ctaaa 118  Q
    |||||    
T  49220191 ctaaa 49220187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 49220320 - 49220368
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||  ||||||||||||||| |||||||    
T  49220320 aattaaattaacagaaaggaccaagctgatactttaaataaagttaagg 49220368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 52857105 - 52857057
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  52857105 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 52857057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 52857167 - 52857262
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||||||| ||| |||||||||||         ||||||||||| |||| ||||||||  | |||||||||||| |||||||    
T  52857167 taatactaattaaataagttaagggaccaaaatttaacg-tttttttgaattaaattaacagaagggaccaaaccgttactttaaataaagttaagg 52857262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 11047154 - 11047116
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacg 53  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  11047154 taatactaattaaataagttaagcgaccaaaatttaacg 11047116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 11047216 - 11047264
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||| ||||||| | ||||||||||||| |||||||    
T  11047216 aattaaattaacagaaatgaccaaactaatactttaaataaagttaagg 11047264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 13301885 - 13301933
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  13301885 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 13301933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 13312541 - 13312589
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  13312541 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 13312589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 26246997 - 26246949
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  26246997 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 26246949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 28253678 - 28253726
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||| || |||| ||||||||||||||| |||||||    
T  28253678 aattaaattaacagaaatgatcaaactgatactttaaataaagttaagg 28253726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 29430113 - 29430021
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgtta 108  Q
    ||||||||||||||||||||||| ||| |||||||||||         ||||||||||| ||||| ||||||| ||||||||||||||| ||||    
T  29430113 taatactaattaaataagttaagggaccaaaatttaacg-tttttttgaattaaattaagagaaaagaccaaattgatactttaaataaagtta 29430021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 51024623 - 51024527
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagga 112  Q
    ||||||||||||||||| ||||| ||| |||||||||||         ||||||||||| ||||||||| ||| ||||||||||||||| ||||||||    
T  51024623 taatactaattaaataaattaagggaccaaaatttaacgtttttttt-aattaaattaacagaaaggactaaactgatactttaaataatgttaagga 51024527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 43099452 - 43099397
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaaggacctaaa 118  Q
    |||||||| || ||||| |||||||| |||||||||||||| ||||||||||||||    
T  43099452 aattaaatcaatagaaatgaccaaaacgatactttaaataaagttaaggacctaaa 43099397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 36215808 - 36215846
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacg 53  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  36215808 taatactaattaaataagttaagggactaaaatttaacg 36215846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 35016927 - 35016984
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaag-gacctaaat 119  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |||||| |||||||||    
T  35016927 aattaaattaacagaaaggatcaaactgatactttaaataaagttaagagacctaaat 35016984  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 36215778 - 36215729
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagga 112  Q
    ||||||||||| |||||||||||||  |||||||||||||| ||||||||    
T  36215778 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagga 36215729  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 1113339 - 1113291
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  1113339 aattaaattaacagaaacgaccaaactgatactttaaataaagttaagg 1113291  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 51399345 - 51399297
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  51399345 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 51399297  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 55620322 - 55620274
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||| ||||||||| ||||| |||||||    
T  55620322 aattaaattaacagaaaggaccaaactgatacttttaataaagttaagg 55620274  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 55627626 - 55627578
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||| ||||||||| ||||| |||||||    
T  55627626 aattaaattaacagaaaggaccaaactgatacttttaataaagttaagg 55627578  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 14251387 - 14251480
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaa 109  Q
    |||||||||||||||||| |||| ||| ||||||||||          ||||||||||| ||||||||||||| ||||||||| ||||| |||||    
T  14251387 taatactaattaaataagataagggaccaaaatttaac-atttttttgaattaaattaacagaaaggaccaaactgatactttcaataaagttaa 14251480  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 17254622 - 17254585
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaac 52  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  17254622 taatactaattaaataagttaagggaccaaaatttaac 17254585  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 35016865 - 35016828
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaac 52  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  35016865 taatactaattaaataagttaagggaccaaaatttaac 35016828  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 51399407 - 51399444
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaac 52  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  51399407 taatactaattaaataagttaagggaccaaaatttaac 51399444  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 14251325 - 14251277
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  14251325 aattaaattaatagaaaggatcaaaccgatactttaaataaagttaagg 14251277  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 17254684 - 17254732
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||| ||||||| ||| ||||||||||| |||||||    
T  17254684 aattaaattaacagaaaagaccaaactgacactttaaataaagttaagg 17254732  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 29430143 - 29430183
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataa 103  Q
    ||||||||||| |||||||||| || |||||||||||||||    
T  29430143 aattaaattaacagaaaggaccgaactgatactttaaataa 29430183  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 43099483 - 43099519
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaa 51  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  43099483 taatactaattaaataagttaagggaccaaaatttaa 43099519  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 44304111 - 44304063
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||| ||||| |||||||    
T  44304111 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagg 44304063  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 38978853 - 38978901
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  38978853 aattaaattaacagaaaggaccaaactgatactttaaataaagttaagg 38978901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 12261019 - 12261110
Alignment:
Q  19 actaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||||||||||| ||| |||||||||||         ||||||||||||||||||||||||   || ||||||||||| |||||||    
T  12261019 actaattaaataagttaagggaccaaaatttaacgtttttttg-aattaaattaaaagaaaggaccaagccgacactttaaataaagttaagg 12261110  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 36065405 - 36065500
Alignment:
Q  15 taatactaattaaataagttaagagactaaaatttaacgnnnnnnnnnaattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||||||||| |||||||  |||||||||||         ||||||||||| |||||||||||||  |||||||| ||||| |||||||    
T  36065405 taatactaattaaataagataagagatcaaaatttaacgtttttttg-aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagg 36065500  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 10373253 - 10373301
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||| ||||| |||||||    
T  10373253 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagg 10373301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 16581466 - 16581418
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  16581466 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 16581418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 25945955 - 25945907
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    |||||||||||  ||||||| |||| ||||||||||||||| |||||||    
T  25945955 aattaaattaactgaaaggatcaaactgatactttaaataaagttaagg 25945907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 36065343 - 36065295
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  36065343 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 36065295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 26092 - 26044
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  26092 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagg 26044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 26201 - 26249
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| |||||||||||||  |||||||| ||||| |||||||    
T  26201 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagg 26249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 959246 - 959294
Alignment:
Q  63 aattaaattaaaagaaaggaccaaaatgatactttaaataacgttaagg 111  Q
    ||||||||||| ||||||||  ||| ||||||||||||||| |||||||    
T  959246 aattaaattaacagaaaggattaaactgatactttaaataaagttaagg 959294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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