View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_59 (Length: 239)
Name: NF20261_low_59
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_59 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 23012938 - 23012726
Alignment:
| Q |
30 |
atatttgctatgtgtgtggaacattaatatatgtcgctattggagcatgtgtta--------gtatgattatctatctaactatggatgaaatcaaatta |
121 |
Q |
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| T |
23012938 |
atatttgctatgtgtgtggaatattaatatatgtcgctattggagcatgtgttacagtgttagtatgattatctatctaactatggatgaaatcaaatta |
23012839 |
T |
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| Q |
122 |
ttattccgtcaacaaataatataatatgaatactaacagtattccctcaacnnnnnnnnnnnnnngaatactaacagttttgttagagttatcctgagtt |
221 |
Q |
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| T |
23012838 |
ttattccgtcaacaaataatataatatgaatactaacagtattccctaa-----taaaaaaaaatgaatactaacagttttgttagagttatccggagtt |
23012744 |
T |
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| Q |
222 |
cagaaccaataattgttt |
239 |
Q |
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| T |
23012743 |
cagaaccaatagttgttt |
23012726 |
T |
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