View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_62 (Length: 237)
Name: NF20261_low_62
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33168530 - 33168751
Alignment:
| Q |
1 |
catctcaaattcaagaacaactagtactcatcacaaaaatctaatgaactagtttggatataaatggatgcagaaagagaaagaatgcatcatatgcata |
100 |
Q |
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| T |
33168530 |
catctcaaacttaagaacaactagtactcatcacaaaaatctaatgaactagtttggatataaatggatgcagaaagagaaagaatgcatcatatgcata |
33168629 |
T |
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| Q |
101 |
agtaattatgtatacaaatataatcaaatgttgtaaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagcttgatgaatgaagaa |
200 |
Q |
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| T |
33168630 |
agtaattatgtatacaaatataatcaaatgttgtaaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagcttgatgaatgaagaa |
33168729 |
T |
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| Q |
201 |
gagggttcaactcataggcatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33168730 |
gagggttcaactcataggcatt |
33168751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 33147513 - 33147599
Alignment:
| Q |
128 |
atgttgtaaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagcttgatgaatgaagaagagggttcaactca |
214 |
Q |
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| T |
33147513 |
atgttgtaaaaattaccagcaaagtcaaagtaaggaaacttgttatgtggaacaaagcttgatgattgaagaagagggttcaactca |
33147599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 33173112 - 33173203
Alignment:
| Q |
131 |
ttgtaaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagcttgatgaatgaagaagagggttcaactcataggcatt |
222 |
Q |
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| T |
33173112 |
ttgtaaaacttaccagcaaagtcaaagtaaggaaacttgttatgaggcacaaagcttgatgattgaagaagagggttcaactcaaaggcatt |
33173203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 33149665 - 33149731
Alignment:
| Q |
134 |
taaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagcttgatgaatgaagaa |
200 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33149665 |
taaaaattacaagcaaagtcaaagtaaggaaacttgttatgtggcacaaagcttgatgaatgaagaa |
33149731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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