View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_63 (Length: 236)
Name: NF20261_low_63
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 41710212 - 41710009
Alignment:
| Q |
18 |
gtttcttttgaagaactggaaacatttactacaaattgcacaacttgaaattttgtaaataaataatatatagcattttggcataatatgtggacggata |
117 |
Q |
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| T |
41710212 |
gtttcttttcaagaactggaaacatttactacaaattgcacgacttgaaattttgtaaataaataatatatagcattt-ggcataatatgtggacggata |
41710114 |
T |
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| Q |
118 |
ctattgaaatccacaactcgactctattcatttgccttttctacaaaaatagcaattatgtacatgtaaatgttgtttcacccttaattgatcttttatt |
217 |
Q |
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|||||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41710113 |
ctattgaaatccacaaatcaactctattcatttaccttttctacaaaaatagcaataatgtacatgtaaatgttgtttcacccttaattgatcttttatt |
41710014 |
T |
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| Q |
218 |
ctgtg |
222 |
Q |
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||||| |
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| T |
41710013 |
ctgtg |
41710009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 14110839 - 14111039
Alignment:
| Q |
18 |
gtttcttttgaagaactggaaacatttactacaaattgcacaacttgaaattttgtaaataaataatatatagcattttggcataatatgtggacggata |
117 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
14110839 |
gtttcttttatagtactggaaacatttactacaaattgcacaacttgacattctgtgaataaataatatatagcattt-ggcatattatgtggacggata |
14110937 |
T |
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| Q |
118 |
ctattgaaatccacaactcgactctattcatttgccttttctacaaaa-atagcaattatgtacatgtaaatgttgtttcacccttaattgatcttttat |
216 |
Q |
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||||||||||||||||||| ||||||||||||| |||||| ||||||| || ||||||||||||||||||||| ||||| || |||||||||||||| |
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| T |
14110938 |
ctattgaaatccacaactcaactctattcatttaccttttgtacaaaagttaccaattatgtacatgtaaatgtcatttca-ccggaattgatcttttat |
14111036 |
T |
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| Q |
217 |
tct |
219 |
Q |
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||| |
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| T |
14111037 |
tct |
14111039 |
T |
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