View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20261_low_65 (Length: 234)

Name: NF20261_low_65
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20261_low_65
NF20261_low_65
[»] chr8 (3 HSPs)
chr8 (135-230)||(22594552-22594647)
chr8 (164-230)||(16906038-16906104)
chr8 (135-170)||(16906255-16906290)
[»] chr7 (1 HSPs)
chr7 (135-230)||(42754150-42754245)
[»] chr5 (5 HSPs)
chr5 (135-230)||(14347631-14347726)
chr5 (135-230)||(28905187-28905282)
chr5 (135-230)||(28941582-28941677)
chr5 (135-230)||(30645457-30645552)
chr5 (143-230)||(39548328-39548415)
[»] chr1 (2 HSPs)
chr1 (135-230)||(16659634-16659729)
chr1 (164-230)||(38658457-38658523)
[»] chr6 (3 HSPs)
chr6 (135-230)||(28865831-28865926)
chr6 (164-230)||(12587452-12587518)
chr6 (135-170)||(12587661-12587696)
[»] chr4 (3 HSPs)
chr4 (143-230)||(2735038-2735125)
chr4 (164-230)||(53595746-53595812)
chr4 (135-170)||(53595963-53595998)
[»] chr3 (2 HSPs)
chr3 (164-230)||(53227781-53227847)
chr3 (135-170)||(53227998-53228033)
[»] scaffold0259 (1 HSPs)
scaffold0259 (138-170)||(12271-12303)
[»] scaffold0150 (1 HSPs)
scaffold0150 (138-170)||(39117-39149)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 22594552 - 22594647
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22594552 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 22594647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 16906104 - 16906038
Alignment:
Q  164 caaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16906104 caaactccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 16906038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 16906290 - 16906255
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatc 170  Q
    ||||||||||||||||||||||||||||| ||||||    
T  16906290 tctttttcaatctttaccaatttagaaccaaaaatc 16906255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 42754150 - 42754245
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42754150 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 42754245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 14347631 - 14347726
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14347631 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 14347726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 28905282 - 28905187
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  28905282 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaacaatttccatttttctctctc 28905187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 28941677 - 28941582
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  28941677 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaacaatttccatttttctctctc 28941582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 30645552 - 30645457
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30645552 tctttttcaatatttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 30645457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 39548415 - 39548328
Alignment:
Q  143 aatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39548415 aatctttaccaatttagaacccaaaatccatcatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 39548328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 16659729 - 16659634
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  16659729 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaacaatttccatttttctctctc 16659634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 38658523 - 38658457
Alignment:
Q  164 caaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38658523 caaattccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 38658457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 28865831 - 28865926
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  28865831 tctttttcaatctttaccaatttagaacccaaaatccatcatttcttcaatcttattctttatagtttcctaaaaccatttccatttttctctctc 28865926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 12587518 - 12587452
Alignment:
Q  164 caaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12587518 caaactccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 12587452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 12587696 - 12587661
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatc 170  Q
    ||||||||||||||||||||||||||||||||||||    
T  12587696 tctttttcaatctttaccaatttagaacccaaaatc 12587661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 2735038 - 2735125
Alignment:
Q  143 aatctttaccaatttagaacccaaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2735038 aatctttaccaatttagaacccaaaatccatcatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 2735125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 53595812 - 53595746
Alignment:
Q  164 caaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53595812 caaactccacaatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 53595746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 53595998 - 53595963
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatc 170  Q
    ||||||||||||||||||||||||||||||||||||    
T  53595998 tctttttcaatctttaccaatttagaacccaaaatc 53595963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 53227847 - 53227781
Alignment:
Q  164 caaaatccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccattcttctctctc 230  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53227847 caaactccaccatttcttcaatcttattcttcatagtttcctaaaaccatttccatttttctctctc 53227781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 53228033 - 53227998
Alignment:
Q  135 tctttttcaatctttaccaatttagaacccaaaatc 170  Q
    ||||||||||||||||||||||||||||||||||||    
T  53228033 tctttttcaatctttaccaatttagaacccaaaatc 53227998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 12271 - 12303
Alignment:
Q  138 ttttcaatctttaccaatttagaacccaaaatc 170  Q
    |||||||||||||||||||||||||||||||||    
T  12271 ttttcaatctttaccaatttagaacccaaaatc 12303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 39117 - 39149
Alignment:
Q  138 ttttcaatctttaccaatttagaacccaaaatc 170  Q
    |||||||||||||||||||||||||||||||||    
T  39117 ttttcaatctttaccaatttagaacccaaaatc 39149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University