View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_66 (Length: 230)
Name: NF20261_low_66
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 1293706 - 1293903
Alignment:
| Q |
10 |
atgtcgaagaatattttatgtgagatccttaataattagattaagtgatcaattgagagagttaaagggacaaaacaacatgtcaaaatacttaagaggc |
109 |
Q |
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| T |
1293706 |
atgtccaacaatattttatgtgagatccttaataattagattaagtgatcaattgagagagttaaagggacaaaacaacatgtcaaaatacttaagaggc |
1293805 |
T |
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| Q |
110 |
atttaataactattctgattttaaaaaggctttcttgcaattcaagtttgtttttcttataaatatagcatgaggtcttttatattatatagtgataa |
207 |
Q |
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| T |
1293806 |
atttaataactactctgattttaaaaaggctttcttgcaattcaagtttgtttttcttataaatatagcatgaggtcttttatattatatagtgataa |
1293903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 1285877 - 1285961
Alignment:
| Q |
68 |
gagttaaagggacaaaacaacatgtcaaaatacttaagaggcatttaataactattctgattttaaaaaggctttcttgcaattc |
152 |
Q |
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| T |
1285877 |
gagttaaagggacaaaacaacatatcaaaatacttgagggacatttgataacgattctaatttttaaaaggttttcttgcaattc |
1285961 |
T |
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