View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20261_low_71 (Length: 216)
Name: NF20261_low_71
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_71 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 38086184 - 38085998
Alignment:
| Q |
14 |
aagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086184 |
aagaaaaggaacacattttattctcaatgggaagacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagt |
38086085 |
T |
|
| Q |
114 |
tctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086084 |
tctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaa |
38085998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 38112004 - 38111818
Alignment:
| Q |
14 |
aagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagt |
113 |
Q |
| |
|
||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
38112004 |
aagaaaaggtactcattttattctgaatggaaagacacactatgtgaatggattcaattcctattggttaatgatcatggcatctgacccatctacaagt |
38111905 |
T |
|
| Q |
114 |
tctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaa |
200 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
38111904 |
tctaaggtcacttcaaatttccaacaagcttctcgacatggtttaaatgtaggaagaacatgggcttgcaacgatggaggttataaa |
38111818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 38142985 - 38142799
Alignment:
| Q |
14 |
aagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagt |
113 |
Q |
| |
|
||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| | || ||||||||||| ||||||||||| |
|
|
| T |
38142985 |
aagaaaaggtactcattttattctgaatggaaagacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagg |
38142886 |
T |
|
| Q |
114 |
tctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaa |
200 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
38142885 |
gtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaagaacattggctttcaacgatggagattataaa |
38142799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 38091764 - 38091578
Alignment:
| Q |
14 |
aagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagt |
113 |
Q |
| |
|
||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||||| | ||||| | | |||||| |||| | ||||||||| |
|
|
| T |
38091764 |
aagaaaaggaatccattttcttatgaatgggaagacacactatgtgaatggattcaattcccactggttgatgattatggcagctgacctatctacaaga |
38091665 |
T |
|
| Q |
114 |
tctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaa |
200 |
Q |
| |
|
| || || || || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38091664 |
cccaaagttacatctgcatttcaacaagcttcacaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggctataaa |
38091578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 38156299 - 38156121
Alignment:
| Q |
14 |
aagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagt |
113 |
Q |
| |
|
||||||||| || ||||||||| | |||||||| || | || ||||||||||||||||||| ||||| | || ||||||||||| ||||||||||| |
|
|
| T |
38156299 |
aagaaaaggcactcattttattttaaatgggaagccatattacttgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagg |
38156200 |
T |
|
| Q |
114 |
tctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggag |
192 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
38156199 |
gtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaagaacatgggctttcaacgatggag |
38156121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 45891705 - 45891776
Alignment:
| Q |
129 |
acttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaa |
200 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||| | | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
45891705 |
acttttcaagaagcttcccaaaatggtttaaacttggcaagaacatgggccttcaatgatggaggttataaa |
45891776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University