View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_low_9 (Length: 473)
Name: NF20261_low_9
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 54643858 - 54643403
Alignment:
| Q |
1 |
acagagtttaaaatgtgaaacttttcttttcaatcatgattaatgttgtatctatctacttctatatacatttgtctcaacatacccctggcagttcctt |
100 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54643858 |
acagagtataaattgtgaaacttttcttttcaatcatgattaatgttgtatctatctacttctatatacatttgtctcaacatacccctggcagttcctt |
54643759 |
T |
|
| Q |
101 |
gattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcctgatctgaaaaagaaaatattatcatcacagcattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54643758 |
gattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcctgatctgaaaaagaaaatattatcatcacagcattca |
54643659 |
T |
|
| Q |
201 |
aaatatatttctcnnnnnnngaaaggaaattgccaaaattttatttcagtagagggaagatatcatgcctcttctgcagaagaattcacaacttttaggc |
300 |
Q |
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| T |
54643658 |
aaatatatttctcaaaaaaagaaaggaaattgccaaaattttatttcagtagagggaagatatcatgcctcttctgcagaagaattcacaacttttaggc |
54643559 |
T |
|
| Q |
301 |
tatttttaagatcagaaacctacnnnnnnntattagcagggtcaaactgaaaatcagtttaaatgcatttttccttaatgaaattgtcagtaaatagaaa |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54643558 |
tatttttaagatcagaaacctacaaaaaaatattagcagggtcaaactgaaaatcagtttaaatgcatttttccttaatgaaattgtcagtaaatagaaa |
54643459 |
T |
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| Q |
401 |
tctttatacctgagaatagaactgaatcctgaatgaaaagaccctgagcttagctt |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54643458 |
tctttatacctgagaatagaactgaatcctgaatgaaaagaccctgagcttagctt |
54643403 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 3242408 - 3242328
Alignment:
| Q |
91 |
gcagttccttgattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcctgatctga |
171 |
Q |
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|||||||| |||||||||||||| || |||| ||| || || ||||| ||||| ||||||||||| |||||||| |||||| |
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| T |
3242408 |
gcagttccatgattcaaagcattgccaagagaaagaatggtctgcatgattcttttcaatttgaccgaattccttatctga |
3242328 |
T |
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