View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_108 (Length: 259)

Name: NF20262_high_108
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_108
NF20262_high_108
[»] chr7 (4 HSPs)
chr7 (15-152)||(42168601-42168738)
chr7 (59-152)||(6927412-6927505)
chr7 (217-259)||(42168494-42168536)
chr7 (217-259)||(6927305-6927347)
[»] chr6 (2 HSPs)
chr6 (59-152)||(14539178-14539271)
chr6 (217-259)||(14539071-14539113)
[»] chr4 (4 HSPs)
chr4 (59-152)||(502669-502762)
chr4 (66-128)||(1031612-1031674)
chr4 (217-259)||(502562-502604)
chr4 (218-259)||(1033350-1033391)
[»] chr2 (1 HSPs)
chr2 (59-152)||(17254377-17254470)
[»] chr1 (3 HSPs)
chr1 (59-152)||(20374669-20374762)
chr1 (217-259)||(20482244-20482286)
chr1 (217-259)||(20374827-20374869)
[»] chr8 (2 HSPs)
chr8 (59-122)||(20855443-20855506)
chr8 (59-152)||(39230994-39231087)
[»] scaffold0189 (1 HSPs)
scaffold0189 (65-128)||(25504-25567)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 42168738 - 42168601
Alignment:
Q  15 aatattgacaataactcttttcatactaaaaccaaatagtaagtaatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataat 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42168738 aatattgacaataactcttttcatactaaaatcaaatagtaagtaatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataat 42168639  T
Q  115 ttaaaattcattagnnnnnnngtttcgctatcaagatc 152  Q
    ||||||||||||||       |||||||||||||||||    
T  42168638 ttaaaattcattagtttttttgtttcgctatcaagatc 42168601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 6927505 - 6927412
Alignment:
Q  59 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  6927505 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 6927412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 42168536 - 42168494
Alignment:
Q  217 ctatgcacaatatttctattcctaggattgaaacaagttagaa 259  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42168536 ctatgcacaatatttctattcctaggattgaaacaagttagaa 42168494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 6927347 - 6927305
Alignment:
Q  217 ctatgcacaatatttctattcctaggattgaaacaagttagaa 259  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  6927347 ctatgcacagtatttctattcctaggattgaaacaagttagaa 6927305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 14539271 - 14539178
Alignment:
Q  59 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  14539271 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 14539178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 14539113 - 14539071
Alignment:
Q  217 ctatgcacaatatttctattcctaggattgaaacaagttagaa 259  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  14539113 ctatgcacagtatttctattcctaggattgaaacaagttagaa 14539071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 502762 - 502669
Alignment:
Q  59 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  502762 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 502669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 1031612 - 1031674
Alignment:
Q  66 gtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattag 128  Q
    |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  1031612 gtttatacaagctaaatcttctaatcaataatttggtcaaaaaaataatttaaaattcattag 1031674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 502604 - 502562
Alignment:
Q  217 ctatgcacaatatttctattcctaggattgaaacaagttagaa 259  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  502604 ctatgcacagtatttctattcctaggattgaaacaagttagaa 502562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 1033350 - 1033391
Alignment:
Q  218 tatgcacaatatttctattcctaggattgaaacaagttagaa 259  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  1033350 tatgcacaatatttcaatttctaggattgaaacaagttagaa 1033391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 17254470 - 17254377
Alignment:
Q  59 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  17254470 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 17254377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 20374669 - 20374762
Alignment:
Q  59 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 152  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  20374669 aatagcggtttatacaatctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 20374762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 20482244 - 20482286
Alignment:
Q  217 ctatgcacaatatttctattcctaggattgaaacaagttagaa 259  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  20482244 ctatgcacaatatttctattcctaggattgaaacaagttagaa 20482286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 20374827 - 20374869
Alignment:
Q  217 ctatgcacaatatttctattcctaggattgaaacaagttagaa 259  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  20374827 ctatgcacagtatttctattcctaggattgaaacaagttagaa 20374869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 20855506 - 20855443
Alignment:
Q  59 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20855506 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaatt 20855443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 39230994 - 39231087
Alignment:
Q  59 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 152  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||       |||||||||||||||||    
T  39230994 aatagtggtttatacaagctaaatcttctaatcgataatttggctaaaaaaataatttaaaattcattagtttttttgtttcgctatcaagatc 39231087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 25504 - 25567
Alignment:
Q  65 ggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattag 128  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  25504 ggtttatagaagctaaatcttctaatcgataatttggcaaaagaattaatttaaaattcattag 25567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University