View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_119 (Length: 246)
Name: NF20262_high_119
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_119 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 41842606 - 41842504
Alignment:
| Q |
144 |
ctactataagagtgtagcaagtagaaaaagaaacacacctcatctctaaaagcctcaacatgatgcttccctaaatccttcttgagggccttcaagattt |
243 |
Q |
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| T |
41842606 |
ctactataagagtgtagcaagtagaataagaaacacacctcatctctaaaagcctcaacatgatgcttccctaaatccttcttgagggccttcaagattt |
41842507 |
T |
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| Q |
244 |
ctt |
246 |
Q |
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||| |
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| T |
41842506 |
ctt |
41842504 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41842741 - 41842669
Alignment:
| Q |
1 |
ctttaccagccatccattttttgaaggactttattgccaaatcaatggannnnnnnaacgttccaacctgcaa |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41842741 |
ctttaccagccatccattttttgaaggactttattgccaaatcaatggatttttttaacgttccaacctgcaa |
41842669 |
T |
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