View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_135 (Length: 216)

Name: NF20262_high_135
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_135
NF20262_high_135
[»] chr8 (4 HSPs)
chr8 (22-138)||(26930585-26930701)
chr8 (18-87)||(26940475-26940544)
chr8 (18-87)||(26963509-26963578)
chr8 (157-203)||(26930722-26930768)
[»] chr5 (1 HSPs)
chr5 (22-130)||(36673485-36673593)
[»] chr1 (1 HSPs)
chr1 (22-127)||(29414114-29414219)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 26930585 - 26930701
Alignment:
Q  22 gaaaccttctttttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatatcttttaaattcgtcctaagttattctaaacttca 121  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26930585 gaaaccttctttttactaaaccatgctgctaactatttaaaacctacattatatgatagtcaatatcttttaaatttgtcctaagttattctaaacttca 26930684  T
Q  122 taataactgtagtagtg 138  Q
    ||||||||| |||||||    
T  26930685 taataactgaagtagtg 26930701  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 26940544 - 26940475
Alignment:
Q  18 acatgaaaccttctttttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatat 87  Q
    ||||| ||||||| |||||| |||||| | ||||||| |||||||| |||||||||||||||||||||||    
T  26940544 acatggaaccttccttttaccaaaccatgttgctaaccatttaaaatccacattatatgatagtcaatat 26940475  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 26963509 - 26963578
Alignment:
Q  18 acatgaaaccttctttttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatat 87  Q
    ||||| ||||||| |||||| |||||| | ||||||| |||||||| |||||||||||||||||||||||    
T  26963509 acatggaaccttccttttaccaaaccatgttgctaaccatttaaaatccacattatatgatagtcaatat 26963578  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 26930722 - 26930768
Alignment:
Q  157 gtaacatttcaaatacctgaaagggtgttttatgtctgattcatctc 203  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  26930722 gtaacatttcaaatacctgtaagggtgttttatgtctgattgatctc 26930768  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 36673485 - 36673593
Alignment:
Q  22 gaaaccttctttttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatatcttttaaattcgtcctaagttattctaaacttca 121  Q
    |||||||||  |||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||||| | |  |||||||||||||||||    
T  36673485 gaaaccttccatttactaaaccatgctgctaaccatttaaaacccacattatatgataatcaatatcttttaaattcataccgagttattctaaacttca 36673584  T
Q  122 taataactg 130  Q
    |||||||||    
T  36673585 taataactg 36673593  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 29414114 - 29414219
Alignment:
Q  22 gaaaccttctttttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatatcttttaaattcgtcctaagttattctaaacttca 121  Q
    ||||||||| ||||| ||||  | | |||| || ||| |||||||| ||| ||||||| |||| ||||||||||||| | || ||||||| ||||||| |    
T  29414114 gaaaccttccttttaataaaaaatgctgcttaccattcaaaacccaaattttatgataatcaagatcttttaaattcctactgagttattataaacttaa 29414213  T
Q  122 taataa 127  Q
    ||||||    
T  29414214 taataa 29414219  T

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