View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_140 (Length: 206)

Name: NF20262_high_140
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_140
NF20262_high_140
[»] chr4 (7 HSPs)
chr4 (32-186)||(36412115-36412269)
chr4 (32-186)||(36417446-36417600)
chr4 (37-176)||(36397865-36398002)
chr4 (37-186)||(36426278-36426428)
chr4 (37-186)||(36404800-36404947)
chr4 (118-186)||(36388165-36388233)
chr4 (116-186)||(36434194-36434264)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 36412115 - 36412269
Alignment:
Q  32 gtttataaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacnnnnnnngcaaaggagtccttga 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  36412115 gtttataaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacaaaaaaagcaaaggagtccttga 36412214  T
Q  132 taaaaagaggttggctgcaattcttgtagcttctatagttgcaattatcatcctc 186  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  36412215 taaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctc 36412269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 36417446 - 36417600
Alignment:
Q  32 gtttataaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacnnnnnnngcaaaggagtccttga 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  36417446 gtttataaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacaaaaaaagcaaaggagtccttga 36417545  T
Q  132 taaaaagaggttggctgcaattcttgtagcttctatagttgcaattatcatcctc 186  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  36417546 taaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctc 36417600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 36397865 - 36398002
Alignment:
Q  37 taaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacnnnnnnngcaaaggagtccttgataaaa 136  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||||||||| |||||||||||||||||||||       |||||||||||||||||||||    
T  36397865 taaatttgacaccacttat--gtgtagtttaaacttctctggacttgtttcttcttatcagctaattacaacaaaaaaagcaaaggagtccttgataaaa 36397962  T
Q  137 agaggttggctgcaattcttgtagcttctatagttgcaat 176  Q
    |||||||||||| |||| | |||| ||| |||||||||||    
T  36397963 agaggttggctgtaattatggtagtttcaatagttgcaat 36398002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 36426278 - 36426428
Alignment:
Q  37 taaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttctta---tcagctaattacaacnnnnnnngcaaaggagtccttgata 133  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||||   |||||||| ||| ||       |||||||||||||||  |    
T  36426278 taaatttgacaccacttat--gtgtagtttaaacttctttggacttgtttcttcttagcgtcagctaactacgacaaaaaaagcaaaggagtccttggca 36426375  T
Q  134 aaaagaggttggctgcaattcttgtagcttctatagttgcaattatcatcctc 186  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  36426376 aaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctc 36426428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 36404800 - 36404947
Alignment:
Q  37 taaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacnnnnnnngcaaaggagtccttgataaaa 136  Q
    ||||||||||| ||||| |  || |||||||||||| ||||||||||| | ||  |||||||||||||||||       |||||||||  ||||| ||||    
T  36404800 taaatttgacagcacttat--gtatagtttaaacttatttggacttgtatctttatatcagctaattacaacaaaaaaagcaaaggagcacttgacaaaa 36404897  T
Q  137 agaggttggctgcaattcttgtagcttctatagttgcaattatcatcctc 186  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  36404898 agaggttggctgcaattctggtagcttctattgttgcaattgtcatcctc 36404947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 36388165 - 36388233
Alignment:
Q  118 aaaggagtccttgataaaaagaggttggctgcaattcttgtagcttctatagttgcaattatcatcctc 186  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  36388165 aaaggagttcttgataaaaagaggttggctgcaattcttgtagcttctataattgcaattgtcctcctc 36388233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 36434194 - 36434264
Alignment:
Q  116 gcaaaggagtccttgataaaaagaggttggctgcaattcttgtagcttctatagttgcaattatcatcctc 186  Q
    |||| ||||||| | |||| || ||||||||||||||| | |||||||||||||||||  ||||| |||||    
T  36434194 gcaacggagtccctcataagaaaaggttggctgcaattttggtagcttctatagttgctgttatcgtcctc 36434264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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