View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_16 (Length: 590)
Name: NF20262_high_16
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 273 - 580
Target Start/End: Original strand, 25377736 - 25378042
Alignment:
| Q |
273 |
taacacttcctggcatagttgtttgaagaaattgaagtggtgatcaaattaatccatgctgtttagagtagtataatgattactcatgtttggtctacaa |
372 |
Q |
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| T |
25377736 |
taacacttcttggcatagttgtttgaagaaattgaagtggtgatcaaattaatccatgctgtttagagtagtataatgattactcatgtttggtctacaa |
25377835 |
T |
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| Q |
373 |
tagttataagcttcattgttccgccttaagtcacaagcgagtaattcttctattacttgaagattgaatgaagttagggcctagtcggtcttctcctttc |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25377836 |
tagttataagcttcattgttccgccttaagtcacaagcgagtaattcttctattacttgaagattgaatgaagttagggcctagtcggtcttctcctttc |
25377935 |
T |
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| Q |
473 |
tgctttaattaccaaaaaccgaccttaaataaaccacctctctatctctctgttttaaattcaaccactccggctatctcttctatgtgatttttcaccg |
572 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25377936 |
tgctttaattacc-aaaaccgaccttaaataaaccacctctctatctctctgttttaaattcaaccactccggctatctcttctatgtgatttttcaccg |
25378034 |
T |
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| Q |
573 |
cttctctg |
580 |
Q |
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| T |
25378035 |
cttctctg |
25378042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 25377495 - 25377623
Alignment:
| Q |
19 |
aaatcgccgacctcaaaccccaactttccggtggattcgctgtccaatcattcaagacacatcaaaagaaaaggttggtgcagcgaaaacgtgttgaaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25377495 |
aaatcgccgacctcaaaccccaactttccggtggattcgctgtccaatcattgaagacacatcaaaagaaaaggttggtgcagcgaaaacgtgttgaaca |
25377594 |
T |
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| Q |
119 |
agatgaacctcaataccttactataatat |
147 |
Q |
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| T |
25377595 |
agatgaacctcaataccttactataatat |
25377623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 25377637 - 25377701
Alignment:
| Q |
202 |
ttaaaacattttaccaatgtatagtctgcattaaatccatcattctcatttacatgctttgtttt |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25377637 |
ttaaaacattttaccaatgtatagtctgcattaaatccatcattctcatttacatgctttgtttt |
25377701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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