View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_high_17 (Length: 579)
Name: NF20262_high_17
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 7886521 - 7886686
Alignment:
| Q |
17 |
caaaatgtgccttgtaagacacgaaatcgtaacttcaagagtgcatgtattgctgtatctggcgatgacgaagaatgtgaccatgattgcaggagagtag |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7886521 |
caaattgtgccttgtaagacacgaaatcgtaacttcaagagtgcatgtattgctgtatctggcgacgacgaagaatgtgaccatgattgcaggagagtag |
7886620 |
T |
|
| Q |
117 |
gaggctggaatggtggttcttgcaaaaatcagaaatgtgtttgtgactgttgaacatctcctacat |
182 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7886621 |
gaggctggtatggtggttcttgcaaaaatcagaaatgtgtttgtgactgttgaacatctcctacat |
7886686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 7875513 - 7875592
Alignment:
| Q |
87 |
aagaatgtgaccatgattgcaggagagtaggaggctggaatggtggttcttgcaaaaatcagaaatgtgtttgtgactgt |
166 |
Q |
| |
|
||||||||||| ||| ||||||||||| || |||||||| || |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
7875513 |
aagaatgtgactatggttgcaggagaggagtaggctggagaggaggttattgcaaaaagcagaaatgtgtttgtgactgt |
7875592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 327 - 511
Target Start/End: Original strand, 40323342 - 40323526
Alignment:
| Q |
327 |
tggtgcaccgtcctcattttatgagctgcatcaaaaatgtaatacttgagaattgagatactttgtattgcatttaattatgctattttcaataaaggta |
426 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40323342 |
tggtgcaccgtcctcattttatgaactgcatcaaaaatgtaatacttgagaattgagatactttgtattgcatttaattatgctattttcaataaaggtg |
40323441 |
T |
|
| Q |
427 |
aaaacatactgctaaattttgaaaatgaaaaatatggtcaggtggtggttccaatcttacagccttttaatcttcatattcttcc |
511 |
Q |
| |
|
| |||||||| |||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40323442 |
acaacatactactaaattttggaaatgaaaaatatggtcaagcggtgtttccaatcttacagccttttaatctttatattcttcc |
40323526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 563
Target Start/End: Original strand, 40323547 - 40323589
Alignment:
| Q |
521 |
gtttccctcataaaacgagtttcctttagtcatgacactccac |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40323547 |
gtttccctcataaaacgagtttcctttagtcatgacactccac |
40323589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 1236370 - 1236476
Alignment:
| Q |
201 |
tattaggtcaagcaacatctaaacctaaaaatttccctctaattgtaatgcattaattaccaaaattgttaaccctaaaatatttccctccaaagtcttt |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1236370 |
tattaggtaaagcaacatctaaacctaaaaatttccctctaactgtactgcataaatta-ctaaattgttaaccctaaaacatttccctccaaagtcttt |
1236468 |
T |
|
| Q |
301 |
gccaattt |
308 |
Q |
| |
|
| |||||| |
|
|
| T |
1236469 |
ggcaattt |
1236476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 2643774 - 2643822
Alignment:
| Q |
129 |
gtggttcttgcaaaaatcagaaatgtgtttgtgactgttgaacatctcc |
177 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
2643774 |
gtggttcttgcaaaaatctgaaatgtgtttgtgcttgttgaacatctcc |
2643822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 1237016 - 1237095
Alignment:
| Q |
293 |
aagtctttgccaatttgaattccaatnnnnnnnn--tggtgcaccgtcctcattttatgagctgcatcaaaaatgtaatac |
371 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||| |
|
|
| T |
1237016 |
aagtctttgccaatttgaattccaataaaaaaaaaatggtgcaccgtcctcattttatgcgct-catcgaaaatgtaatac |
1237095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 4098873 - 4098934
Alignment:
| Q |
195 |
aaagcttattaggtcaagcaacatctaaacctaaaaatttccctctaattgtaatgcattaa |
256 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
4098873 |
aaagcttattaggtcatacaacacctaaacctagatttttccctctaattgtgctgcattaa |
4098934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 38089025 - 38088898
Alignment:
| Q |
185 |
cttatccttaaaagcttattaggtcaagcaacatctaaacctaaaaatttccctctaattgtaatgcattaattaccaaaattgttaaccctaaaatatt |
284 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||| |||||||||| ||||| ||||||||||| |||||||| | | || |||||||||||| || || |
|
|
| T |
38089025 |
cttattcttaaaag-ttattaggttaagcaacacctaaacctaataattttcctctaattgtgttgcattaactcctaagcatgttaaccctaatatgtt |
38088927 |
T |
|
| Q |
285 |
tccctccaaagtctttgccaatttgaatt |
313 |
Q |
| |
|
||||||| || | ||||||||||||||| |
|
|
| T |
38088926 |
tccctcccaaattcttgccaatttgaatt |
38088898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University