View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_19 (Length: 544)
Name: NF20262_high_19
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Complemental strand, 43344397 - 43343886
Alignment:
| Q |
18 |
caagtagtatcctggaggagcaatggccccagatggtggcgccgccatcctaacggtgtaacttccaggttcttgtgcaacgagctcatcgatcttgaga |
117 |
Q |
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| T |
43344397 |
caagtagtatcctggaggagcaatggccccagatggtggcgccgccatcctaacggtgtaacttccaggttcttgtgcaacgagctcatcgatcttgaga |
43344298 |
T |
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| Q |
118 |
attataagcctctgacccatggagaaaccatgagtagtgaaaggtggtgcatacattgtcacctttatatcattagctgtcaacccagccccatcttcca |
217 |
Q |
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| T |
43344297 |
attataagcctctgacccatggagaaaccatgagtagtgaaaggtggtgcatacattgtcacctttatatcattagctgtcaacccagccccatcttcca |
43344198 |
T |
|
| Q |
218 |
ctgaaaaatttgtttcaaatgtatttccatactttaactcttttttagttgcatcttgattaatttgtggcctatacttataaaaagcctcgtccaaata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43344197 |
ctgaaaaatttgtttcaaatgtatttccatactttaactcttttttagttgcaccttgattaatttgtggcctatacttattaaaagcctcgtccaaata |
43344098 |
T |
|
| Q |
318 |
aggaggagagaatgcttcaactctagtctcagttggatacttatcattatctttataagtttcatgtgtgttgcttccactaacccaaatcttaccatta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43344097 |
aggaggagagaatgcttcaactctagtctcagttggatacttatcattatctttataagtttcatgtgtgttgcttccactaacccaaatcttaccatta |
43343998 |
T |
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| Q |
418 |
ggaagcacagcggaagttgaatgatacattcttgcaatttgagtaggcatcatcgccttaaacctcaaacccttaggcttatctggattatacaacacag |
517 |
Q |
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| T |
43343997 |
ggaagcacagccgaagttgaatgatacattcttgcaatttgagtaggcatcatcgccttaaacctcaaacccttaggcttatctggattatacaacacag |
43343898 |
T |
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| Q |
518 |
gtgtgtaatttg |
529 |
Q |
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| T |
43343897 |
gtgtgtaatttg |
43343886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 451
Target Start/End: Complemental strand, 33440931 - 33440793
Alignment:
| Q |
313 |
aaataaggaggagagaatgcttcaactctagtctcagttggatacttatcattatctttataagtttcatgtgtgttgcttccactaacccaaatcttac |
412 |
Q |
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||||| || ||||| ||| |||||||||||||||||||||| | | ||| ||| || || || ||||||||||| |||||| |||||||| || | |
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| T |
33440931 |
aaatatggtggagaaaatccttcaactctagtctcagttgggaattgatctacatccttgtatgtatcatgtgtgttacttccagctacccaaatttttc |
33440832 |
T |
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| Q |
413 |
cattaggaagcacagcggaagttgaatgatacattcttg |
451 |
Q |
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| T |
33440831 |
cattaggaagcaatgctgaagttgaatgatacattcttg |
33440793 |
T |
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