View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_2 (Length: 773)
Name: NF20262_high_2
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 707; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 6 - 757
Target Start/End: Original strand, 41072284 - 41073035
Alignment:
| Q |
6 |
agaagcaaaggcggtgaattcgtcaaattcaaatgaaccagcgcaacagtctatgcctcaagatgctgatgagattttcaagaagatgaaggaaactggt |
105 |
Q |
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| T |
41072284 |
agaagcaagggcggtgaattcgtcaaattcaaatgaaccagcgcaacagtctatgcctcaagatgctgatgagattttcaagaagatgaaggaaactggt |
41072383 |
T |
|
| Q |
106 |
cttatacctaatgcagtggctatgcttgatggtttatgtaaagatggtaatgttcaagaagctctgaagcttttcggtttgatgcgggaaaagggaacga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41072384 |
cttatacctaatgcagtggctatgcttgatggtttatgtaaagatggtaatgttcaagaagctctgaagcttttcggtttgatgcgggaaaagggaacga |
41072483 |
T |
|
| Q |
206 |
ttccggagattgtcatttacactgctgtagtggagggatacacaaaggcacacaaggcagatgatgctataaggattttcaggaaaatgcagggtaatgg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41072484 |
ttccggagattgtcatttacactgctgtagtggagggatacacaaaggcacacaaggcagatgatgctataaggattttcaggaaaatgcagagtaatgg |
41072583 |
T |
|
| Q |
306 |
catttcgccgaatgcttttagttacactgttcttatacaaggactctataaatgtagcagattacaggatgctgttgaattttgtgtagagatgttagaa |
405 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41072584 |
cattttgccgaatgcttttagttacactgttcttatacaaggactctataaatgtagcagattacaggatgctgttgaattttgtgtagagatgttagaa |
41072683 |
T |
|
| Q |
406 |
gcaggccattctctaaacgtgacgactttcgttggcttggtagatggtttttgcaaagaaaatggaattgaagaagcaaaaggtgttatcaagacattaa |
505 |
Q |
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| T |
41072684 |
gcaggccattctctaaacgtgacgactttcgttggcttggtagatggtttttgcaaagaaaatggaattgaagaagcaaaaggtgttatcaagacattaa |
41072783 |
T |
|
| Q |
506 |
caggaaagggttttgcttttgacgagaaagctgttagggtgtttttggacaagaaagcaccattttcaccctccatttgggaggccatctttgggaagaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41072784 |
caggaaagggttttgcttttgacgagaaagctgttagggtgtttttggacaagaaagcaccattttcagcctccatttgggaggccatctttgggaagaa |
41072883 |
T |
|
| Q |
606 |
agctccacagatgccattttaaatatattagcagactatgtaagnnnnnnnatcttcgtgattcttgtactcttttgccagactatttttatgccattgt |
705 |
Q |
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| T |
41072884 |
agctccacagatgccattttaaatatattagcagactatgtaagtttttttatctttgtgattcttgtactcttttgccagactatttttatgccattgt |
41072983 |
T |
|
| Q |
706 |
gtaatgtataattacttaaggtgcacctatttaaattttttaaagaaggttc |
757 |
Q |
| |
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|
| T |
41072984 |
gtaatgtataattactttaggtgcacctatttaaattttttaaagaaggttc |
41073035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 16 - 757
Target Start/End: Original strand, 7532384 - 7533126
Alignment:
| Q |
16 |
gcggtgaattcgtcaaattcaaatgaaccagcgcaacagtctatgcctcaagatgctgatgagattttcaagaagatgaaggaaactggtcttataccta |
115 |
Q |
| |
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||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || | |
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| T |
7532384 |
gcggtgaattcgtcaaatttcaaccaaccagcgcaagagtctatgcctcaagatgctgatgcgattttcaataagatgaaggaaactggtcttatcccaa |
7532483 |
T |
|
| Q |
116 |
atgcagtggctatgcttgatggtttatgtaaagatggtaatgttcaagaagctctgaagcttttcggtttgatgcgggaaaagggaacgattccggagat |
215 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| || |
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| T |
7532484 |
atgcagtggccatgcttgatggtttatgtaaagatggtaattttcaagaagctttgaagctttttggtttgatgcgggaaaagggaacaattccggatat |
7532583 |
T |
|
| Q |
216 |
tgtcatttacactgctgtagtggagggatacacaaaggcacacaaggcagatgatgctataaggattttcaggaaaatgcagggtaatggcatttcgccg |
315 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||| || |
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|
| T |
7532584 |
tgtcatttacactgctgtagtggacggatacacaaaggcacacaaggctgatgatgctatcaggattttcaggaaaatgcagagtaatagcatttcacca |
7532683 |
T |
|
| Q |
316 |
aatgcttttagttacactgttcttatacaaggactctataaatgtagcagattacaggatgctgttgaattttgtgtagagatgttagaagcaggccatt |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
7532684 |
aatgcttttagttacactgttcttatacaaggactctacaaatgtagcaaattacatgatgctgttgaattttgcgttgagatgttagaagcaggccatt |
7532783 |
T |
|
| Q |
416 |
ctctaaacgtgacgactttcgttggcttggtagatggtttttgcaaagaaaatggaattgaagaagcaaaaggtgttatcaagacattaacaggaaaggg |
515 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7532784 |
ctctaaatgtgacgactttcgttggcttggtagatggtttctgcaaggaaaatggtattgaagaagcaaaaggtgttatcaagacattaataggaaaggg |
7532883 |
T |
|
| Q |
516 |
ttttgcttttgacgagaaagctgttagggtgtttttggacaagaaagcaccattttcaccctccatttgggaggccatctttgggaagaaagctccacag |
615 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7532884 |
ttttgcttttgatgagaaagctgttagggtgtttttggacaagaaagcaccattttcaccctccatttgggaggccatctttgggaagaaagctccacag |
7532983 |
T |
|
| Q |
616 |
atgccattttaaatatattagcagactatgtaag-nnnnnnnatcttcgtgattcttgtactcttttgccagactatttttatgccattgtgtaatgtat |
714 |
Q |
| |
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|| |||||||||||||||| | ||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
7532984 |
ataccattttaaatatatttggagactgtgtaagtttttttcttcttcttgattcttgtactcttttgccagactattttcatgtcattgtgtaatgtac |
7533083 |
T |
|
| Q |
715 |
aattacttaaggtgcacctatttaaattttttaaagaaggttc |
757 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||| |
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| T |
7533084 |
gattactataggtgcacctatttaaattttctaaagaaggttc |
7533126 |
T |
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