View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_high_22 (Length: 525)
Name: NF20262_high_22
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 34525723 - 34526013
Alignment:
| Q |
1 |
cacttagtgtgccacaataaatttatatatgttgaacccaaacatcataaaatattgtcaaatcacgttcaaagacattaaacacacgaatagagacggt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34525723 |
cacttaatgtgccacaataaatttatatatgttgaacccaaacatcataaaatatcgtcaaatcacgttcaaagacattaaacacacgaatagagacggt |
34525822 |
T |
|
| Q |
101 |
taagaatatcgtcaacgtgaatccaaacactacattaatcacaaaaaagtcaagaatattgaatcaaccaattaactagtgtctttgtcggaaaatatag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34525823 |
caagaatatcgtcaacgtgaatccaaacactacattgatcacaaaaaagtcaagaatattgaatcaaccaattaactagtgtctttgtcggaaaatatcg |
34525922 |
T |
|
| Q |
201 |
agggtaatataaagttgcacatttccataactgcctttgtgacagaatcttgaaataatttttgtaacataaaacattattctaggtagtac |
292 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34525923 |
agggtaatatatagttgcacatttccataactg-ctttgtgacagaatcttgaaataatttttgtaacataaaacattattccaggtagtac |
34526013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 320 - 513
Target Start/End: Original strand, 34526016 - 34526209
Alignment:
| Q |
320 |
ggatatgggtagtgttatagtgtattaaggttcatatcattaccgcaaaacttcaatttcaacctatgacaaaatcctactactacatcttactttaaca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34526016 |
ggatatgggtagtgttatagtgtattaaggttcatatcattaccgcaaaatttcaatttcaacctatgacaaaatcctactgctacatcttactttaaca |
34526115 |
T |
|
| Q |
420 |
aaccagaccatgaaaccaaacaactaagactctgttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgataacattttttct |
513 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34526116 |
aaccagaccatgaaaccaaacaactaacactctgttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgataacattttttct |
34526209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 501
Target Start/End: Original strand, 31677101 - 31677148
Alignment:
| Q |
454 |
ttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgat |
501 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
31677101 |
ttgagcttatagcttataagctaatttgacaaaaaagacctgtttgat |
31677148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 44222521 - 44222484
Alignment:
| Q |
38 |
ccaaacatcataaaatattgtcaaatcacgttcaaaga |
75 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
44222521 |
ccaaacatcataaaatattttcaaatcatgttcaaaga |
44222484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University