View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_23 (Length: 522)
Name: NF20262_high_23
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 2 - 507
Target Start/End: Complemental strand, 33993955 - 33993452
Alignment:
| Q |
2 |
ataaatgactaactcggcatgaaaaatggtaataaaggattcatgatgcagttttgccaaacaaatagctttattcgaatcaagtttgcttctctaagca |
101 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993955 |
ataaatgactaactcgacatgaaaaatggtaataaaggattcatgatgcagttttgccaaacaaatagctttattcgaatcaagtttgcttctctaagca |
33993856 |
T |
|
| Q |
102 |
catgccaatcacttcacgtcatttatttcccacaataataaaagttccacaaacattgtcaagaacaagcaagnnnnnnnnnnnnnnntaatagtccaaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33993855 |
catgccaatcacttcacgtcatttatttcccacaataataaaagttccacaaacattgtcaagaacaagcaagacacacacacaca--taatagtccaaa |
33993758 |
T |
|
| Q |
202 |
caaagtaacatttaaatgccttgttccatcatggctctgatcctcattggaagaccataaagctttataaacccaacagcatcagcatgattatatatct |
301 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993757 |
caaagtaacatttaaatgccttgttccatcatggctctgatcctcattggaagaccataaagctttataaacccaacagcatcagcatgattatatatct |
33993658 |
T |
|
| Q |
302 |
ccccactctcaaatgaagaaatatcttccctatataaactataaggactcttccgacccgtcacagaagcactacctttatacagtttcaaactcactga |
401 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993657 |
ccccactctcaaatgaagaaatatcttccctatataaactataaggactcttccgacccgtcacagaagcactacctttatacagtttcaaactcactga |
33993558 |
T |
|
| Q |
402 |
acctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatatttaagt |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993557 |
acctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatatttaagt |
33993458 |
T |
|
| Q |
502 |
gctaat |
507 |
Q |
| |
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|||||| |
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| T |
33993457 |
gctaat |
33993452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 344 - 506
Target Start/End: Complemental strand, 34000617 - 34000455
Alignment:
| Q |
344 |
aaggactcttccgacccgtcacagaagcactacctttatacagtttcaaactcactgaacctgttgtagtctgtgagatcttctccatgaatgaatccat |
443 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||| |
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| T |
34000617 |
aaggactcttccgacccgtcacagaagcactgcctttatacagtttcaaactcactgaacctgttgtaatctctgagatcttttccatgaatgcatccat |
34000518 |
T |
|
| Q |
444 |
cgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatatttaagtgctaa |
506 |
Q |
| |
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|| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||| |||||| |
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| T |
34000517 |
tgactcacgaagaggatcgaaccaccttccagcatacactaactctgcatacttaattgctaa |
34000455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 208 - 507
Target Start/End: Original strand, 18852217 - 18852516
Alignment:
| Q |
208 |
aacatttaaatgccttgttccatcatggctctgatcctcattggaagaccataaagctttataaacccaacagcatcagcatgattatatatctccccac |
307 |
Q |
| |
|
|||| |||||||||||| || | ||| || | || | ||||||||||||| |||||| ||||| ||| |||||||||| |||| |||||| || | | |
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| T |
18852217 |
aacacttaaatgccttgctcaagcattgcccggaccttcattggaagaccgtaaagccggataaaaccagcagcatcagcttgatcatatatatcactat |
18852316 |
T |
|
| Q |
308 |
tctcaaatgaagaaatatcttccctatataaactataaggactcttccgacccgtcacagaagcactacctttatacagtttcaaactcactgaacctgt |
407 |
Q |
| |
|
|||||||||| || ||||||| |||||| | ||| | || ||||||| ||| || |||| | || |||||| || | ||||||| |||| |||||||| |
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| T |
18852317 |
tctcaaatgatgagatatcttgcctatacaggctaaaggggctcttcctacctgttacagtaacagaacctttgtataatttcaaagtcacagaacctgt |
18852416 |
T |
|
| Q |
408 |
tgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatatttaagtgctaat |
507 |
Q |
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||| |||| || ||||||| ||| || | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18852417 |
tgtggtctctgtaatcttctgcataaaggcatccatggattcgcgaagtggatcaaaccatcttccggcatacactaactctgcatatttaagtgctaat |
18852516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 249 - 507
Target Start/End: Original strand, 42865369 - 42865627
Alignment:
| Q |
249 |
tggaagaccataaagctttataaacccaacagcatcagcatgattatatatctccccactctcaaatgaagaaatatcttccctatataaactataagga |
348 |
Q |
| |
|
||||||||| |||||| ||||| ||| |||||||||| |||| ||||||||| | || ||||||||| || ||||||| |||||| | ||| ||||| |
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| T |
42865369 |
tggaagaccgtaaagccggataaaaccagcagcatcagcttgatcatatatctcactaccctcaaatgatgagatatcttgcctatacaggctaaaagga |
42865468 |
T |
|
| Q |
349 |
ctcttccgacccgtcacagaagcactacctttatacagtttcaaactcactgaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgatt |
448 |
Q |
| |
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|||||| ||| | |||| | || |||||| |||| ||||||| | || ||||||||||| ||| | ||||||| ||| || | |||||||| | |
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| T |
42865469 |
ctcttcataccagctacagtaacagaacctttgtacaatttcaaagtaacggaacctgttgtggtcgcagtaatcttctgcataaaggcgtccatcgact |
42865568 |
T |
|
| Q |
449 |
cgcgaagtggatcaaaccatcttccagcatacactaactctgcatatttaagtgctaat |
507 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
42865569 |
cacgaagtggatcaaaccatctaccagcatacactaactctgcatatttaagggctaat |
42865627 |
T |
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