View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_26 (Length: 499)

Name: NF20262_high_26
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_26
NF20262_high_26
[»] chr6 (14 HSPs)
chr6 (9-185)||(30394140-30394317)
chr6 (186-352)||(15868467-15868633)
chr6 (186-352)||(15866655-15866821)
chr6 (186-352)||(33866174-33866340)
chr6 (186-352)||(33869321-33869487)
chr6 (186-312)||(24544733-24544859)
chr6 (194-352)||(14618998-14619155)
chr6 (194-352)||(14611158-14611315)
chr6 (193-288)||(32080076-32080169)
chr6 (305-352)||(1088762-1088809)
chr6 (305-352)||(19645409-19645456)
chr6 (305-352)||(5376952-5377000)
chr6 (305-352)||(5378807-5378855)
chr6 (186-238)||(30488623-30488675)
[»] chr7 (14 HSPs)
chr7 (185-352)||(37405439-37405606)
chr7 (197-352)||(34844126-34844283)
chr7 (209-311)||(21631243-21631345)
chr7 (201-293)||(21633196-21633288)
chr7 (193-311)||(29597970-29598088)
chr7 (193-284)||(21632958-21633049)
chr7 (193-300)||(21630993-21631104)
chr7 (209-312)||(3233015-3233118)
chr7 (305-352)||(4895659-4895706)
chr7 (305-352)||(28124697-28124744)
chr7 (305-352)||(28126524-28126571)
chr7 (186-284)||(9878120-9878218)
chr7 (305-350)||(44963240-44963285)
chr7 (305-352)||(20046605-20046653)
[»] chr1 (9 HSPs)
chr1 (185-352)||(3284577-3284744)
chr1 (186-352)||(3282876-3283042)
chr1 (186-352)||(9312104-9312270)
chr1 (186-350)||(9310489-9310653)
chr1 (186-346)||(902157-902317)
chr1 (185-267)||(33072899-33072981)
chr1 (305-352)||(17449386-17449433)
chr1 (305-352)||(16808688-16808735)
chr1 (186-274)||(5924777-5924865)
[»] scaffold0251 (1 HSPs)
scaffold0251 (197-352)||(6301-6456)
[»] chr5 (4 HSPs)
chr5 (187-352)||(39787050-39787215)
chr5 (193-284)||(21637131-21637222)
chr5 (197-274)||(20012925-20013002)
chr5 (250-312)||(33689981-33690043)
[»] chr4 (15 HSPs)
chr4 (186-311)||(5653163-5653288)
chr4 (194-352)||(23985849-23986006)
chr4 (186-343)||(51295246-51295404)
chr4 (209-352)||(3529163-3529303)
chr4 (190-329)||(18395638-18395776)
chr4 (198-288)||(24807562-24807652)
chr4 (197-274)||(52545105-52545182)
chr4 (188-284)||(42665075-42665171)
chr4 (305-352)||(7040436-7040483)
chr4 (305-352)||(23564784-23564831)
chr4 (305-352)||(23566458-23566505)
chr4 (305-352)||(52520676-52520723)
chr4 (305-352)||(54296503-54296550)
chr4 (186-284)||(18393689-18393787)
chr4 (305-352)||(18656183-18656230)
[»] chr2 (3 HSPs)
chr2 (193-311)||(20957729-20957847)
chr2 (251-311)||(20957557-20957617)
chr2 (305-352)||(29758195-29758242)
[»] scaffold0057 (1 HSPs)
scaffold0057 (186-352)||(58861-59025)
[»] chr8 (11 HSPs)
chr8 (186-274)||(19473683-19473771)
chr8 (186-274)||(19544608-19544696)
chr8 (186-274)||(19588000-19588088)
chr8 (185-268)||(14939672-14939755)
chr8 (197-274)||(31032006-31032083)
chr8 (305-352)||(30224305-30224352)
chr8 (305-352)||(6428815-6428862)
chr8 (305-352)||(25249081-25249128)
chr8 (305-352)||(3375532-3375579)
chr8 (305-352)||(5567501-5567548)
chr8 (186-274)||(950082-950170)
[»] scaffold0060 (1 HSPs)
scaffold0060 (199-311)||(8961-9073)
[»] chr3 (5 HSPs)
chr3 (305-352)||(6789695-6789742)
chr3 (186-284)||(9032695-9032793)
chr3 (305-352)||(1140076-1140123)
chr3 (305-352)||(17402891-17402939)
chr3 (209-274)||(25836524-25836589)
[»] scaffold0160 (1 HSPs)
scaffold0160 (191-260)||(28524-28593)
[»] scaffold0079 (1 HSPs)
scaffold0079 (186-238)||(15746-15798)
[»] scaffold0006 (1 HSPs)
scaffold0006 (197-238)||(39332-39373)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 7e-84; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 30394140 - 30394317
Alignment:
Q  9 gaagaatatgtgaaatcggaagaaagagatgaattgt-gagtggaatgaacatgcaagcaacatcaatatcttagagaacgtagatcttgaaaagcaaat 107  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30394140 gaagaaaatgtgaaatcggaagaaagagatggattgttgagtggaatgaacatgcaagcaacatcaatatcttagagaacgtagatcttgaaaagcaaat 30394239  T
Q  108 aaaaaatgttatatagaatgtcaagattaatatcgtttcttcaagcaatgtccttgttcatagcaaacaaaaagatcc 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30394240 aaaaaatgttatatagaatgtcaagattaatatcgtttcttcaagcaatgtccttgttcatagcaaacaaaaggatcc 30394317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 15868633 - 15868467
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868633 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 15868534  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  15868533 agagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagagattagt 15868467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 15866821 - 15866655
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15866821 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 15866722  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  15866721 agagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctaaatatagagattagt 15866655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 33866340 - 33866174
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  33866340 tgttagtaatcaaggaatcccaaggattaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacccatagtgacccatagg 33866241  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33866240 agagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 33866174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 33869487 - 33869321
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  33869487 tgttagtaatcaaggaatcccaaagataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatatccatagtgactcatagg 33869388  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  33869387 agagtaaactagatttaacaaaagatagtgaatgcgtacaatagtgttcctatatatagagattagt 33869321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 24544859 - 24544733
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||  |||||| | ||| ||||| ||||||||| |||||  ||||||||     
T  24544859 tgttagtaatcatggaatcccaaggataaagatcatagtgataagcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcatagt 24544760  T
Q  286 agagtaaacttgatttaacaaaagata 312  Q
    |||||||||| ||||| | ||||||||    
T  24544759 agagtaaactagatttgataaaagata 24544733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 194 - 352
Target Start/End: Complemental strand, 14619155 - 14618998
Alignment:
Q  194 atcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaa 293  Q
    |||||||||||||||||||||| || ||||  |||| ||||| ||||||||||   |||||||||||||||||| |||||| ||||||||||||| | ||    
T  14619155 atcaaggaatcccaaggataaaaatgatagatatcaactagagagagagcatagtagtattcatgtgggagataaccatagagactcataggagaatcaa 14619056  T
Q  294 cttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
     | ||||| | |||||||| ||||   |||||  ||||||||||||||||||| |||||    
T  14619055 -tagatttgataaaagataatgaaatgatacatgagtgttcctatatatagagtttagt 14618998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 194 - 352
Target Start/End: Complemental strand, 14611315 - 14611158
Alignment:
Q  194 atcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaa 293  Q
    |||||||||||  || ||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||| |||||| ||||||||||| | | ||    
T  14611315 atcaaggaatctgaaagataaagatcatagatatcagctagagagagagcatagtagtattcatgtgggagataaccatagagactcataggataatcaa 14611216  T
Q  294 cttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
     |  |||| | |||||||| ||||   |||||  ||||||||||||||||||| |||||    
T  14611215 -tatatttgataaaagataatgaaatgatacacgagtgttcctatatatagagtttagt 14611158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 32080169 - 32080076
Alignment:
Q  193 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggaga 288  Q
    ||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||   ||||||||||| |||||| | | || |||||||||||||    
T  32080169 aatcatggaatcccatggataaagatcatagtgatcagctag--agagagcatagtagtattcatgtgagagataactacagagactcataggaga 32080076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 1088762 - 1088809
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  1088762 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 1088809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 19645409 - 19645456
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  19645409 aaaagataatgaatgagtacaatagtgttcttatatatagagattagt 19645456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 5377000 - 5376952
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatat-agagattagt 352  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  5377000 aaaagatattgaatgagtacaatagtgttcctatatataagagattagt 5376952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 5378855 - 5378807
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatat-agagattagt 352  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  5378855 aaaagatattgaatgagtacaatagtgttcctatatataagagattagt 5378807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 30488675 - 30488623
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaag 238  Q
    ||||| |||||| |||||| ||||||||||||||||| | |||||| ||||||    
T  30488675 tgttactaatcatggaatctcaaggataaagatcatattaatcagcaagaaag 30488623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 185 - 352
Target Start/End: Original strand, 37405439 - 37405606
Alignment:
Q  185 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37405439 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacccatagtgactcatag 37405538  T
Q  285 gagagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37405539 gagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 37405606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 197 - 352
Target Start/End: Complemental strand, 34844283 - 34844126
Alignment:
Q  197 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaactt 296  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||     
T  34844283 aaggaatcccaaggataaagatcatagtgatcaactagaaagagagcataggtgtattcatgtgggagatacccatagtgactcatagtagagtaaacta 34844184  T
Q  297 gatttaacaaaagat--agtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    ||||| | |||||||  | ||||   |||||  ||||||||||||||||||| |||||    
T  34844183 gatttgataaaagatggattgaaatgatacatgagtgttcctatatatagagtttagt 34844126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 209 - 311
Target Start/End: Original strand, 21631243 - 21631345
Alignment:
Q  209 ggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaa 308  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| | ||||    
T  21631243 ggataaagatcatattgatcagctagaaagagagcataggtgtattaatgtgggagatacccatagtgactcatagtagagtaaactagatttgataaaa 21631342  T
Q  309 gat 311  Q
    |||    
T  21631343 gat 21631345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 21633196 - 21633288
Alignment:
Q  201 aatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaa 293  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||| ||||| ||||||||    
T  21633196 aatcccagggataaagatcatagtgatcagctagaaagagagcatagatgtattcatgtgggagatactcatagtgacccatagtagagtaaa 21633288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 29597970 - 29598088
Alignment:
Q  193 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaa 292  Q
    ||||| ||||||||| |||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||||| ||| | |    
T  29597970 aatcatggaatcccagggataaaggtcatagtgatcagcaagaaagagagcataagagtattcatgtgggagatacccatagagactcatagtagaatga 29598069  T
Q  293 acttgatttaacaaaagat 311  Q
    ||| ||||| | |||||||    
T  29598070 actagatttgataaaagat 29598088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 21632958 - 21633049
Alignment:
Q  193 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 284  Q
    ||||| ||||||||| |||||||||||| |||||||||||  |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  21632958 aatcatggaatcccatggataaagatcacagtgatcagctgaaaagagagcataggtgtattcatgtgggagatacacatagtgactcatag 21633049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 193 - 300
Target Start/End: Original strand, 21630993 - 21631104
Alignment:
Q  193 aatcaaggaatcccaaggataaagatcatagtgatc----agctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggaga 288  Q
    ||||| ||||||| | ||||||||||||||||||||    |||||||||||||||||| || |||| ||||||||||||| ||||||||||||||| |||    
T  21630993 aatcatggaatcctagggataaagatcatagtgatcgatcagctagaaagagagcataggtctattaatgtgggagatacacatagtgactcatagtaga 21631092  T
Q  289 gtaaacttgatt 300  Q
    ||||||| ||||    
T  21631093 gtaaactagatt 21631104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 3233118 - 3233015
Alignment:
Q  209 ggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaa 308  Q
    |||||||| ||| |||||||||| |||||||||||||| | |||||||||||||||||| |||||  || | |||| ||| | |||| ||||||| ||||    
T  3233118 ggataaaggtcacagtgatcagcaagaaagagagcataagagtattcatgtgggagatatccatacagatttatagtagaatgaactagatttaataaaa 3233019  T
Q  309 gata 312  Q
    ||||    
T  3233018 gata 3233015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 4895706 - 4895659
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  4895706 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 4895659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 28124697 - 28124744
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  28124697 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 28124744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 28126524 - 28126571
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  28126524 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 28126571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 9878120 - 9878218
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 284  Q
    |||||| ||| | |||||| ||||||||||  | |||||||  ||| ||||||||||||||   |||||||||||||||||| | |||| |||||||||    
T  9878120 tgttagaaattatggaatctcaaggataaatgttatagtgaatagcaagaaagagagcataatagtattcatgtgggagatatctatagagactcatag 9878218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 44963285 - 44963240
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagatta 350  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||    
T  44963285 aaaagatgatgaatgagtacaatagtgttcctatatatagagatta 44963240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 20046605 - 20046653
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatat-agagattagt 352  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  20046605 aaaagatattgaatgagtacaatagtgttcctatatataagagattagt 20046653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 185 - 352
Target Start/End: Complemental strand, 3284744 - 3284577
Alignment:
Q  185 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3284744 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacccatagtgactcatag 3284645  T
Q  285 gagagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3284644 gagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 3284577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 3283042 - 3282876
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  3283042 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcaactagaaagagagcataggtgtattcatgtgggagatacccatagtgacttatagg 3282943  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3282942 agagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 3282876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 9312270 - 9312104
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  9312270 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatactcatagtgactcatggg 9312171  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  9312170 agagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagagattagt 9312104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 186 - 350
Target Start/End: Complemental strand, 9310653 - 9310489
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9310653 tgttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 9310554  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagatta 350  Q
    |||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  9310553 agagtaaattagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagatatta 9310489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 346
Target Start/End: Complemental strand, 902317 - 902157
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  902317 tgttagtaatcaagaaattccaaggataaagatcataatgatcagttagaaagagagcataggtgtattcatgtgggagatacccatagtgactcatagg 902218  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagag 346  Q
    |||||||||| |||||||||||||||| ||||   |||||  |||||||||||||| ||||    
T  902217 agagtaaactagatttaacaaaagataatgaaatgatacatgagtgttcctatatagagag 902157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 33072981 - 33072899
Alignment:
Q  185 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagata 267  Q
    |||||||| |||| |||||| || |||||||| ||||| |||||||| ||||||||| |||| | ||||||||||||||||||    
T  33072981 ctgttagtcatcatggaatctcagggataaaggtcataatgatcagcaagaaagagatcataagagtattcatgtgggagata 33072899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 17449433 - 17449386
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  17449433 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 17449386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 16808688 - 16808735
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| ||||||||||||| |||||||||||||||||    
T  16808688 aaaagatgatgaatgagtacaatagtgttcatatatatagagattagt 16808735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 5924777 - 5924865
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    ||||| |||||| | ||||| | ||||||||||||||||||||||  | ||||  |||||| | |||||||| | |||||||| |||||    
T  5924777 tgttactaatcatgaaatccgatggataaagatcatagtgatcagtaaaaaagcaagcataagagtattcatataggagatactcatag 5924865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 197 - 352
Target Start/End: Complemental strand, 6456 - 6301
Alignment:
Q  197 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaactt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6456 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatagatgtattcatgtgggagatacccatagtgactcataggagagtaaactt 6357  T
Q  297 gatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6356 gatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 6301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 187 - 352
Target Start/End: Original strand, 39787050 - 39787215
Alignment:
Q  187 gttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagga 286  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39787050 gttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgacttatagga 39787149  T
Q  287 gagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    ||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  39787150 gagtaaactagatttaacaaaagacagtgaatgagtaaaatagtgttcctatatatagagattagt 39787215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 21637131 - 21637222
Alignment:
Q  193 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 284  Q
    ||||| ||||||||| |||||||||||||| |||||||  ||||||||| |||| | |||||||||||| |||||||||||| |||| ||||    
T  21637131 aatcatggaatcccatggataaagatcataatgatcagtaagaaagagaacataagagtattcatgtggaagatacccatagagacttatag 21637222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 20012925 - 20013002
Alignment:
Q  197 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    |||||||||||||||| |||||||||||||||| | ||||||  |||||| | ||| ||||||||||||||| |||||    
T  20012925 aaggaatcccaaggatgaagatcatagtgatcaccaagaaagcaagcataagagtactcatgtgggagatactcatag 20013002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 33690043 - 33689981
Alignment:
Q  250 gtattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaagata 312  Q
    ||||||||||||||||||||||||| ||||||||  ||||| || | ||||| | ||||||||    
T  33690043 gtattcatgtgggagatacccatagagactcataatagagtgaattagatttgataaaagata 33689981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 186 - 311
Target Start/End: Original strand, 5653163 - 5653288
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  5653163 tgttagtaatcatggaatgccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacccacagtgactcatagg 5653262  T
Q  286 agagtaaacttgatttaacaaaagat 311  Q
    |||||||||| ||||| | |||||||    
T  5653263 agagtaaactagatttgataaaagat 5653288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 194 - 352
Target Start/End: Complemental strand, 23986006 - 23985849
Alignment:
Q  194 atcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaa 293  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||||    ||||||||||||||||| |||||| ||||||||||||| | ||    
T  23986006 atcaaggaatcccaaggataaagatcatagacatcagctagagagagagcatagtaatattcatgtgggagataaccatagagactcataggagaatcaa 23985907  T
Q  294 cttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
     | ||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  23985906 -tagatttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagt 23985849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 186 - 343
Target Start/End: Complemental strand, 51295404 - 51295246
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||      
T  51295404 tgttagtaattatggaatcctaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatatccatagtgactcataat 51295305  T
Q  286 agagtaaacttgatttaacaaaagatagt-gaatgaatacaatagtgttcctatatata 343  Q
    |||||||||| ||||| | ||||| |||| |||   || || |||||||||||||||||    
T  51295304 agagtaaactagatttgataaaaggtagtagaaatgatgcattagtgttcctatatata 51295246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 3529163 - 3529303
Alignment:
Q  209 ggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaa 308  Q
    |||||||| ||||||||||||||||||  |||||||||   |||||||||||| | ||| |||||| ||||||||||||| | || | ||||| | ||||    
T  3529163 ggataaaggtcatagtgatcagctaga--gagagcatagtagtattcatgtggaaaataaccatagagactcataggagaatcaa-tagatttgataaaa 3529259  T
Q  309 gatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
T  3529260 gataatgaatgagtacaatagtgttcctatatatagagattagt 3529303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 190 - 329
Target Start/End: Original strand, 18395638 - 18395776
Alignment:
Q  190 agtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagag 289  Q
    |||||||| | ||||||| |||||||| |||||||||| ||| |||||||||||||| | ||||||||||||||||||| ||||  ||||||||| | ||    
T  18395638 agtaatcatgaaatcccacggataaaggtcatagtgattagcaagaaagagagcataagagtattcatgtgggagatactcatatagactcatagtatag 18395737  T
Q  290 taaacttgatttaacaaaagatagtgaatgaatacaatag 329  Q
    | || | ||| | | |||||||||||||||| ||||||||    
T  18395738 tgaa-tagatatgataaaagatagtgaatgagtacaatag 18395776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 24807652 - 24807562
Alignment:
Q  198 aggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggaga 288  Q
    ||||||||||||||||||||||||||  || ||||||| ||||||||||   |||||||||||||||||| |||||| |||||||||||||    
T  24807652 aggaatcccaaggataaagatcatagatattagctagagagagagcatagtagtattcatgtgggagatatccatagagactcataggaga 24807562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 52545105 - 52545182
Alignment:
Q  197 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||| ||||||||||||||| |||||    
T  52545105 aaggaatcccaaggataaagatcatagtgatcagcaagaaagcgagcataagagtactcatgtgggagatactcatag 52545182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 42665171 - 42665075
Alignment:
Q  188 ttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 284  Q
    |||||||||| | ||| | |||||||||| ||||||||||| ||||||||||||||||| | ||||| || ||||||||||||||||  ||||||||    
T  42665171 ttagtaatcatgaaattctaaggataaaggtcatagtgatcggctagaaagagagcataagagtatttatctgggagatacccatagaaactcatag 42665075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 7040483 - 7040436
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  7040483 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 7040436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 23564784 - 23564831
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  23564784 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 23564831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 23566458 - 23566505
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  23566458 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 23566505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 52520723 - 52520676
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  52520723 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 52520676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 54296550 - 54296503
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  54296550 aaaagatcatgaatgagtacaatagtgttcctatatatagagattagt 54296503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 18393689 - 18393787
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 284  Q
    |||| ||||||| |||||| || |||||||  |||||||||||| | |||||||||| ||| | ||||| ||||  ||||||| ||||| |||||||||    
T  18393689 tgttcgtaatcatggaatctcagggataaatgtcatagtgatcatcaagaaagagagtataagagtatttatgtatgagatactcatagagactcatag 18393787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 18656230 - 18656183
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| ||||||||| |||||||||||||||||||||    
T  18656230 aaaagatgatgaatgagtacaatagttttcctatatatagagattagt 18656183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 20957847 - 20957729
Alignment:
Q  193 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaa 292  Q
    ||||| ||||||||| |||||||| ||| |||||||||| || ||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||    
T  20957847 aatcatggaatcccagggataaaggtcacagtgatcagcaaggaagagtgcataagagtattcatgtgggagatacccatagtgactcatagtagagtaa 20957748  T
Q  293 acttgatttaacaaaagat 311  Q
    ||| ||||| |||||||||    
T  20957747 actagatttgacaaaagat 20957729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 20957617 - 20957557
Alignment:
Q  251 tattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaagat 311  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  20957617 tattcatgtgggagatacccatagtgactcatagtagagtaaactagatttgacaaaagat 20957557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 29758242 - 29758195
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  29758242 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 29758195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 59025 - 58861
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 285  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||| | ||| ||||||||||||||| |||||  ||||||       
T  59025 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattat 58926  T
Q  286 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    ||| | || | || || | |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  58925 agaatgaa-taga-ttgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 58861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 19473771 - 19473683
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  || ||| | ||| ||||||||||||||| |||||    
T  19473771 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatag 19473683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 19544696 - 19544608
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  || ||| | ||| ||||||||||||||| |||||    
T  19544696 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatag 19544608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 19588000 - 19588088
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  || ||| | ||| ||||||||||||||| |||||    
T  19588000 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatag 19588088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 14939755 - 14939672
Alignment:
Q  185 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatac 268  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||  |||||||| ||| |||||| | ||||||    
T  14939755 ctgttagtaatcatggaatcctaaggataaagatcatagtgatcagcaagaaagcaagcatatgagtactcatgtagaagatac 14939672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 31032006 - 31032083
Alignment:
Q  197 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    ||||||||||||||| ||||||||||||||||||| ||||||  |||||| | ||| ||||||||||||||| |||||    
T  31032006 aaggaatcccaaggacaaagatcatagtgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatag 31032083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 30224352 - 30224305
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  30224352 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 30224305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 6428862 - 6428815
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  6428862 aaaagatgatgaatgattacaatagtgttcctatatatagagattagt 6428815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 25249128 - 25249081
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  25249128 aaaagatcatgaatgagtacaatagtgttcctatatatagagattagt 25249081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 3375532 - 3375579
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||| ||||||  |||||||| ||||||||||||||||||||||    
T  3375532 aaaagataatgaatgggtacaatagagttcctatatatagagattagt 3375579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 5567548 - 5567501
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| ||||||||| |||||||||||||||||||||    
T  5567548 aaaagatgatgaatgagtacaatagttttcctatatatagagattagt 5567501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 950082 - 950170
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    |||||||||||| ||| |||||  |||| ||||||||||||||||  |||||   | |||||| |||||||||| | |||||| |||||    
T  950082 tgttagtaatcatggattcccagagatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatag 950170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 8961 - 9073
Alignment:
Q  199 ggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaacttga 298  Q
    |||||| || |||||||||| ||| |||||||| ||||||||| |||| | |||||||||||| |||||||||||  ||||||||| ||| | ||||| |    
T  8961 ggaatctcagggataaagattataatgatcagcaagaaagagaacataagagtattcatgtggaagatacccataaggactcatagtagaatgaacttta 9060  T
Q  299 tttaacaaaagat 311  Q
    ||| | |||||||    
T  9061 tttgataaaagat 9073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 6789742 - 6789695
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  6789742 aaaagatagtgaatgagtacaatagtattcctatatatagagattagt 6789695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 9032695 - 9032793
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 284  Q
    ||||||| |||| | ||||||| ||||||||  |||| |||||||| | ||||||| |||| |  ||||||||||||||||||||||||  ||||||||    
T  9032695 tgttagttatcatgaaatcccagggataaagtacataatgatcagcaaaaaagagaacatacgaatattcatgtgggagatacccatagaaactcatag 9032793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 1140123 - 1140076
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 352  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  1140123 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 1140076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 17402891 - 17402939
Alignment:
Q  305 aaaagatagtgaatgaatacaatagtgttcctatatat-agagattagt 352  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  17402891 aaaagatattgaatgagtacaatagtgttcctatatataagagattagt 17402939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 25836589 - 25836524
Alignment:
Q  209 ggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 274  Q
    |||||||| ||| |||||||||| |||||| | ||||| | ||||||||||| ||||| |||||||    
T  25836589 ggataaaggtcaaagtgatcagcaagaaagggtgcataagagtattcatgtgagagatgcccatag 25836524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 28593 - 28524
Alignment:
Q  191 gtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtg 260  Q
    ||||||| ||||||| |||||||||| ||||| |||||||  ||||||||||| || | |||||||||||    
T  28593 gtaatcatggaatccaaaggataaaggtcatattgatcagaaagaaagagagcgtaagagtattcatgtg 28524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 15798 - 15746
Alignment:
Q  186 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaag 238  Q
    |||||||||||| |||||| ||||||||||||||||||  |||||| ||||||    
T  15798 tgttagtaatcatggaatctcaaggataaagatcatagcaatcagcaagaaag 15746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 39373 - 39332
Alignment:
Q  197 aaggaatcccaaggataaagatcatagtgatcagctagaaag 238  Q
    |||||||| |||| ||||||||||||||||||||| ||||||    
T  39373 aaggaatctcaagaataaagatcatagtgatcagcaagaaag 39332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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