View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_27 (Length: 497)
Name: NF20262_high_27
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 41021637 - 41022106
Alignment:
| Q |
17 |
aaaatgtactatgtaattatactttctttataagactcttttaaccttctcatatccattnnnnnnnntcgaaagtgaaattaatgtgtttaatttatgt |
116 |
Q |
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| T |
41021637 |
aaaatgtactatgtaattatactttctttataagactcttttaaccttctcatatccattaaaaaaaatcgaaagtgaaattaatgtgtttaatttatgt |
41021736 |
T |
|
| Q |
117 |
atgcgtctttttgtatatttaatttttcatatccaagttaagttaatagtattgattaatgttctaaaaataataaatgcgtttaaaaatttgcaaaatg |
216 |
Q |
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| T |
41021737 |
atgcgtctttttgtatatttaatttttcatatccaagttaagttaatagtattgattaatgttctaaaaataataaatgagtttaaaaatttgcaaaatg |
41021836 |
T |
|
| Q |
217 |
acttatatgtatagaggaatgttctaaaaatattttaagattagagaaagagggaacaccatatgcatcactctcaattatagaatatttttaatgtgtg |
316 |
Q |
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| T |
41021837 |
acttatatgcatagacgaatgttctaaaaatattttaagattagagaaagagggaacaccatatgcatcactctcaattatagaatatttttaatgtgtg |
41021936 |
T |
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| Q |
317 |
aaatgaacagnnnnnnnaattttaaatagtttgtaaaatgaacaattgtttctaagtgatagtgagatgaatgttaaatgtagctagaaataaaacaaga |
416 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41021937 |
aaatgaacagttttttttattttaaatagtttgtaaaatgaacaattgtttctaagtgatagtgagatgaatgttaaatgtagctagaaataaaacaaga |
41022036 |
T |
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| Q |
417 |
cattctatttctatcttccatggaacctaagttcaatgcaatgtatcacttctatgatatattcatctca |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41022037 |
cattctatttctatcttccatggaacctaagttcaatgcaatgtatcacttctatgatatattcatctca |
41022106 |
T |
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