View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_28 (Length: 493)

Name: NF20262_high_28
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_28
NF20262_high_28
[»] chr5 (2 HSPs)
chr5 (21-393)||(33541535-33541908)
chr5 (175-383)||(18571146-18571357)
[»] chr6 (12 HSPs)
chr6 (228-376)||(212955-213103)
chr6 (178-380)||(9170858-9171054)
chr6 (108-262)||(7041467-7041621)
chr6 (291-383)||(7029976-7030068)
chr6 (108-261)||(7025721-7025880)
chr6 (115-250)||(7046817-7046952)
chr6 (178-380)||(9159374-9159570)
chr6 (108-265)||(7012785-7012948)
chr6 (291-380)||(7012983-7013072)
chr6 (178-261)||(7029854-7029937)
chr6 (291-380)||(7025919-7026008)
chr6 (295-380)||(7041639-7041724)
[»] chr1 (8 HSPs)
chr1 (298-431)||(8814178-8814311)
chr1 (298-441)||(247022-247168)
chr1 (298-441)||(251206-251355)
chr1 (108-188)||(18991175-18991255)
chr1 (295-344)||(235374-235423)
chr1 (108-161)||(4428602-4428655)
chr1 (108-204)||(4439831-4439927)
chr1 (111-261)||(246841-246991)
[»] chr3 (15 HSPs)
chr3 (295-430)||(9494646-9494784)
chr3 (137-443)||(9343845-9344151)
chr3 (137-406)||(9448314-9448583)
chr3 (108-240)||(9494821-9494953)
chr3 (108-235)||(9432867-9432994)
chr3 (108-235)||(41985599-41985726)
chr3 (108-218)||(9407337-9407447)
chr3 (110-240)||(9695629-9695759)
chr3 (108-255)||(9402350-9402500)
chr3 (108-167)||(9425544-9425603)
chr3 (108-167)||(9617549-9617608)
chr3 (108-255)||(9420589-9420739)
chr3 (110-264)||(9336513-9336667)
chr3 (118-235)||(9646382-9646499)
chr3 (118-235)||(9655375-9655492)
[»] chr2 (1 HSPs)
chr2 (108-167)||(20694387-20694446)
[»] chr7 (2 HSPs)
chr7 (143-262)||(450102-450221)
chr7 (107-167)||(3695660-3695720)
[»] chr8 (1 HSPs)
chr8 (109-218)||(44688820-44688929)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 393
Target Start/End: Original strand, 33541535 - 33541908
Alignment:
Q  21 caagatacatcctgtagttgtactagtcaaagcccttgggcgatggacaaatccgaagtgttgaaatgatgagaagacatttttcaaaaa-gatgacaca 119  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||    
T  33541535 caagatacatcctgtagttgtactagtcaaatgccttgggcgatggacaaatccgaagtgttgaaatgatgggaagacatttttcaaaaaagaggacaca 33541634  T
Q  120 attccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccac 219  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541635 attacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccac 33541734  T
Q  220 tccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541735 tccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaat 33541834  T
Q  320 cacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggag 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541835 cacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggag 33541908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 383
Target Start/End: Original strand, 18571146 - 18571357
Alignment:
Q  175 cctaagaacaaaacaa---tatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgac 271  Q
    ||||||||||||||||   |||| ||||||||| | || |||||||||| | |||||||||||| ||||||||| |||| ||||||||| ||||  |||     
T  18571146 cctaagaacaaaacaactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatccttacgggatcatgat 18571245  T
Q  272 cagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattc 371  Q
    ||| ||| |  | ||    ||| |||||||| ||  ||||||||| ||| |||| ||||||||| |||||||| | ||  |||||| |||||||||||||    
T  18571246 cagagaacctaacacccacacactcataaacgtcagctaacaacagatcgccctcgctctccaccaagaatttcatgttcccaccaacaaccaaagattc 18571345  T
Q  372 agccactaactg 383  Q
    | ||| ||||||    
T  18571346 atccattaactg 18571357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 213103 - 212955
Alignment:
Q  228 cttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttg 327  Q
    |||||||||||||||||||| |||||||||||||||||  ||| ||||||| ||  ||||| |||| ||||||||||| ||||||||||||||||||| |    
T  213103 cttctcattaagcttaaacacatgaatccttacaggatcatgatcagggaacccagtacgtatacactcataaacatctactaacaacaaatcaccctcg 213004  T
Q  328 ctctccactaagaatttgacgtctccaccaccaaccaaagattcagcca 376  Q
    ||||||||||||||||| | | |||||||| ||||||| | ||||||||    
T  213003 ctctccactaagaatttcatgcctccaccatcaaccaatggttcagcca 212955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 178 - 380
Target Start/End: Original strand, 9170858 - 9171054
Alignment:
Q  178 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccaggga 277  Q
    |||||||||||  |||| ||||||||| |||| |||||||||| | ||||||||||||||||||||||||||| ||||||||||||||      ||   |    
T  9170858 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacaggat------cattaa 9170951  T
Q  278 agccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccac 377  Q
       | ||||    |||||||||||| ||| ||||||||||||| |||| |||||||||||||||||| | ||  |||||||||||||||| |||||| ||    
T  9170952 gatcaatacaaagacaatcataaacgtccgctaacaacaaatctccctcgctctccactaagaatttcatgttcccaccaccaaccaaaggttcagcaac 9171051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 108 - 262
Target Start/End: Original strand, 7041467 - 7041621
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 207  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||  |||| || |||||  |  | || |||||||||||  |||| ||||||||  |     
T  7041467 aaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtc 7041566  T
Q  208 aacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacag 262  Q
    ||||||||||||| | |||||||||||||||| |||||||||| ||||| |||||    
T  7041567 aacttcacccacttcttctccttctcattaagtttaaacaaatcaatccatacag 7041621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 7029976 - 7030068
Alignment:
Q  291 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactg 383  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||||| || | |||||||||||||||||  ||||||||||||||    
T  7029976 acaatcataaacatccgctaacaacaaatccccctcgctctccactaagaatttcacatttccaccaccaaccaaaggctcagccactaactg 7030068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 7025721 - 7025880
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtc--agccc----ctaagaacaaaacaatatctcctaaa 201  Q
    |||||||||| ||||||||||||||||  ||||||| |||||| | |||||||| |||||  |  | |||    | |||||||||||  |||||||||||    
T  7025721 aaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaaa 7025820  T
Q  202 ctctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 261  Q
    ||| | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  7025821 ctcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 7046817 - 7046952
Alignment:
Q  115 acacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttca 214  Q
    ||||||||||||||||||||  ||||||| |||  ||| |||||||| ||||| |    ||| |||||||||||  |||| ||||||||| |||||||||    
T  7046817 acacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttca 7046916  T
Q  215 cccactccgtctccttctcattaagcttaaacaaat 250  Q
    |||||| | |||||||||||||||||||||||||||    
T  7046917 cccacttcttctccttctcattaagcttaaacaaat 7046952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 380
Target Start/End: Complemental strand, 9159570 - 9159374
Alignment:
Q  178 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccaggga 277  Q
    |||||||||||  |||| ||||||||| |||| |||||||||| | |||||||||| |||||||||||||||| ||||||||||||||      ||   |    
T  9159570 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacaggat------cattaa 9159477  T
Q  278 agccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccac 377  Q
       | ||||    |||||||||| | |||  |||||||||||| |||| |||||||||||||||||| | ||  |||||||||||||||| |||||||||    
T  9159476 gatcaatactaagacaatcataagcctccgataacaacaaatctccctcgctctccactaagaattttatgttcccaccaccaaccaaaggttcagccac 9159377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 265
Target Start/End: Original strand, 7012785 - 7012948
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtc--agccc----ctaagaacaaaacaatatctcctaaa 201  Q
    |||||||||| ||||||||||||||||  ||||||| |||||| | |||||||| |||||  |  | |||    | ||||||||||   |||||||||||    
T  7012785 aaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaaa 7012884  T
Q  202 ctctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggat 265  Q
    ||  | ||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||    
T  7012885 cttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttacaggat 7012948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 7012983 - 7013072
Alignment:
Q  291 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 380  Q
    |||||||||||||||  |||||||||||||  ||| |||||||||||||||||| | ||| || ||||||||||||| ||||||||||||    
T  7012983 acaatcataaacatctgctaacaacaaatcctcctcgctctccactaagaatttcatgtccccgccaccaaccaaaggttcagccactaa 7013072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 7029854 - 7029937
Alignment:
Q  178 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 261  Q
    |||||||||||  |||| || |||||| | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  7029854 aagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 7025919 - 7026008
Alignment:
Q  291 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 380  Q
    ||||| |||||||||| ||||||||||||| |||| |||||||||||||||||| | ||| || || |||| ||||| ||||||||||||    
T  7025919 acaattataaacatccgctaacaacaaatccccctcgctctccactaagaatttcatgtccccgccgccaatcaaaggttcagccactaa 7026008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 7041639 - 7041724
Alignment:
Q  295 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 380  Q
    |||||||||||| ||||||||||||| |||||||| ||| ||||||||||   || ||||| ||||||||||| ||||||||||||    
T  7041639 tcataaacatccgctaacaacaaatctcccttgctttccgctaagaatttcttgtttccacgaccaaccaaaggttcagccactaa 7041724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 8814311 - 8814178
Alignment:
Q  298 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgt 397  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||| |  || || ||| ||| ||||||||||||||||||||||||||| ||||| |    
T  8814311 taaacatctgctaacaacaaatcacccttgctctccactaggaatttaatatccccgccagcaagcaaagattcagccactaactgaacagttgagtcat 8814212  T
Q  398 ccggtccaacagcaactgtccgtccagttttgtc 431  Q
    |||||||||||| ||| ||| |||||||||||||    
T  8814211 ccggtccaacagtaacagtctgtccagttttgtc 8814178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 298 - 441
Target Start/End: Original strand, 247022 - 247168
Alignment:
Q  298 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtgga---gt 394  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||| | ||||||||    |    
T  247022 taaacatctattaacaacaaatcacccttgctctccactaagaatttaatatctccaccaccaaccaaagattcagcaactaaccggacagtggaatcat 247121  T
Q  395 cgtccggtccaacagcaactgtccgtccagttttgtcgacagcataa 441  Q
    | ||||||||||   ||||||||| |||||||||||| || ||||||    
T  247122 cctccggtccaaatccaactgtccatccagttttgtctaccgcataa 247168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 441
Target Start/End: Complemental strand, 251355 - 251206
Alignment:
Q  298 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgt 397  Q
    ||||||||  |||||||||||||||  | ||||||||| |||||||| |  |||||||||||||||||||||| |||||||||||| |||||||| || |    
T  251355 taaacatctgctaacaacaaatcactgtcgctctccaccaagaatttaatatctccaccaccaaccaaagattgagccactaactggacagtggaatcct 251256  T
Q  398 ccggtc------caacagcaactgtccgtccagttttgtcgacagcataa 441  Q
    | ||||      |||||| ||||||||||||||| ||||| || ||||||    
T  251255 caggtccaagttcaacagtaactgtccgtccagtattgtctaccgcataa 251206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 18991175 - 18991255
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaac 188  Q
    ||||| |||||||||||||||| |||| || |||||||||||||| |||||||| |||||  ||  ||| |||||||||||    
T  18991175 aaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaac 18991255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 235374 - 235423
Alignment:
Q  295 tcataaacatccactaacaacaaatcacccttgctctccactaagaattt 344  Q
    |||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  235374 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaattt 235423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 4428602 - 4428655
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaa 161  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||| ||||||||    
T  4428602 aaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaa 4428655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 4439831 - 4439927
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactc 204  Q
    ||||||||||||||||||||| | |||  ||||||| |||||||| |||||||| |||||  ||  ||| || ||||||||  ||||||| ||||||    
T  4439831 aaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 246841 - 246991
Alignment:
Q  111 gatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacag-tcagcccctaagaacaaaacaatatctcctaaactctttaa 209  Q
    |||||||||||||||||||  |||  |||||||  ||||||| |||||||| || |||  || |||| |||||||||||  ||||||||||| |    ||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaacccc-aagaacaaaactgtatctcctaaattagccaa 246939  T
Q  210 cttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 261  Q
    ||||||||| | | ||||| |  |||||||||||||||| | ||||||||||    
T  246940 cttcacccatttcttctcccttgcattaagcttaaacaagtcaatccttaca 246991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 430
Target Start/End: Complemental strand, 9494784 - 9494646
Alignment:
Q  295 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccacca---accaaagattcagccactaactgaacagtgg 391  Q
    ||||||||||| ||||||||||||||||| |  ||||| ||||||||||||| ||| || ||||||   ||||||||||||||||||||||  | ||||     
T  9494784 tcataaacatctactaacaacaaatcaccgtcactctcgactaagaatttgatgtcccccccaccagaaaccaaagattcagccactaactcgaaagtga 9494685  T
Q  392 agtcgtccggtccaacagcaactgtccgtccagttttgt 430  Q
    |||| ||| |||||| || | ||||||||||||||||||    
T  9494684 agtcatccagtccaagagtagctgtccgtccagttttgt 9494646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 443
Target Start/End: Original strand, 9343845 - 9344151
Alignment:
Q  137 acaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcatt 236  Q
    ||||||| |||||||| |||||||| ||||| |||  ||| |||||||||||| |||| |||||| |  ||||||||||||||| | ||||| ||||||     
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatc 9343944  T
Q  237 aagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccact 336  Q
    ||||||||||| || || ||||| || ||   |||| |||||  ||| ||    ||| |||||||  ||||||| |||||| || ||||  ||||| |||    
T  9343945 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaactctccctctctctcgact 9344044  T
Q  337 aagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgtccggtccaacagcaactgtccgtccagttttgtcgacag 436  Q
    ||||||||   ||| || ||||||||||||| ||||   ||||| || ||| | |||| |||||| |||||   ||||||| | ||| |||||||||||     
T  9344045 aagaattttttgtccccgccaccaaccaaaggttcaataactaagtggacattcgagttgtccggcccaaccataactgtctgaccatttttgtcgacaa 9344144  T
Q  437 cataaag 443  Q
    |||||||    
T  9344145 cataaag 9344151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 137 - 406
Target Start/End: Original strand, 9448314 - 9448583
Alignment:
Q  137 acaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcatt 236  Q
    ||||||| |||||||| |||||||| |||||||||  ||| |||||||||||| |||| |||||| |  ||||||||||||| | | ||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  237 aagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccact 336  Q
    ||||||||||| || || ||||| || ||   |||| |||||  ||| ||    ||| |||||||  ||||||| |||||| || ||||  || || |||    
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  337 aagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgtccggtccaa 406  Q
    |||||||| | ||| || ||| ||| ||||| |||||| ||||| || ||| | ||||||||||| ||||    
T  9448514 aagaattttatgtcccctccatcaatcaaaggttcagcaactaagtggacattcgagtcgtccggcccaa 9448583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 9494953 - 9494821
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 207  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||  ||  ||| |||||||||||  |||| ||||||||| |     
T  9494953 aaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatc 9494854  T
Q  208 aacttcacccactccgtctccttctcattaagc 240  Q
    || ||||||||   | |||||||||||| ||||    
T  9494853 aaattcacccatctcatctccttctcatcaagc 9494821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 235
Target Start/End: Original strand, 9432867 - 9432994
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 207  Q
    |||||||| ||||||||||| || |||  ||||||| || || || |||||||||||| | |||  ||||| |||||||||  ||||||||||| ||||     
T  9432867 aaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttg 9432966  T
Q  208 aacttcacccactccgtctccttctcat 235  Q
    | ||||||||||| | ||||||||||||    
T  9432967 atcttcacccacttcctctccttctcat 9432994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 235
Target Start/End: Original strand, 41985599 - 41985726
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 207  Q
    ||||||||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||       
T  41985599 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 41985698  T
Q  208 aacttcacccactccgtctccttctcat 235  Q
    ||||| ||||| | | ||||||||||||    
T  41985699 aacttgacccatttcttctccttctcat 41985726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 9407337 - 9407447
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 207  Q
    ||||| |||||||||||||||||||||  ||||||| ||||| || |||||||| |||||  ||  | | |||||||||||  |||| ||||||||| |     
T  9407337 aaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatc 9407436  T
Q  208 aacttcaccca 218  Q
    |||||||||||    
T  9407437 aacttcaccca 9407447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 9695759 - 9695629
Alignment:
Q  110 agatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaa 209  Q
    |||||||||||||||| || |||||  |||| || |||||||||||||| || ||||||||  |||| || ||||||||  |||| |||||| |  | ||    
T  9695759 agatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaa 9695660  T
Q  210 cttcacccactccgtctccttctcattaagc 240  Q
    ||| ||||||| | |||||||||||| ||||    
T  9695659 cttgacccacttcttctccttctcatcaagc 9695629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 255
Target Start/End: Original strand, 9402350 - 9402500
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctt- 206  Q
    |||||||| |||||||||||| | |||  ||||||| || ||||| |||||||||||| | |  | ||||| |||||||||  |||||| |||| ||||     
T  9402350 aaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaaggaatattttgtccctatgaacaaaaccctatctcttaaattcttc 9402449  T
Q  207 --taacttcacccactccgtctccttctcattaagcttaaacaaatgaatc 255  Q
       ||||||||||||| | |||||||||||| |||  |||||||| |||||    
T  9402450 tcgaacttcacccacttcctctccttctcatcaagtctaaacaaacgaatc 9402500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 9425544 - 9425603
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 167  Q
    |||||||||||||||||||||||||||  ||||||| ||||| || |||||||| |||||    
T  9425544 aaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaaca 9425603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 9617608 - 9617549
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 167  Q
    ||||||||||||||||||||||| |||  ||||||| |||||||| |||||||| |||||    
T  9617608 aaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaaca 9617549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 255
Target Start/End: Original strand, 9420589 - 9420739
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctt- 206  Q
    |||||||| |||||||||||| | |||  ||||||| || ||||| |||||||||||| | |  | ||||| |||||||||  |||||| |||| ||||     
T  9420589 aaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaaggaatattttgtccctatgaacaaaaccctatctcttaaattcttc 9420688  T
Q  207 --taacttcacccactccgtctccttctcattaagcttaaacaaatgaatc 255  Q
       || |||||||||| | |||||||||||| |||  |||||||| |||||    
T  9420689 tcgaatttcacccacttcctctccttctcatcaagtctaaacaaacgaatc 9420739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 264
Target Start/End: Original strand, 9336513 - 9336667
Alignment:
Q  110 agatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaa 209  Q
    |||||||||||||||| |||||||    ||| || |||||||| |||||||| |||||  ||  ||| |||||||||||  ||||||||||| || | |     
T  9336513 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcag 9336612  T
Q  210 cttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacagga 264  Q
    ||| ||||||    |||| ||||||| |||| |||||| || ||||| |||||||    
T  9336613 cttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 9336667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 9646499 - 9646382
Alignment:
Q  118 caattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcaccc 217  Q
    ||||||||||||| |||  ||||||| ||||| ||||||||||| |||||  |  | || || ||||||||  |||| |||||| || | ||||||||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  218 actccgtctccttctcat 235  Q
    | | | ||||||||||||    
T  9646399 atttcttctccttctcat 9646382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 9655492 - 9655375
Alignment:
Q  118 caattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcaccc 217  Q
    ||||||||||||| |||  ||||||| ||||| ||||||||||| |||||  |  | || || ||||||||  |||| |||||| || | ||||||||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  218 actccgtctccttctcat 235  Q
    | | | ||||||||||||    
T  9655392 atttcttctccttctcat 9655375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 20694446 - 20694387
Alignment:
Q  108 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 167  Q
    |||||||||||||||||||||||||||  ||||||| |||||||| |||||||| |||||    
T  20694446 aaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaaca 20694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 450221 - 450102
Alignment:
Q  143 cagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagctt 242  Q
    |||||||||| |||||||||||| |   | | |||||||||||||   ||||||||||| || | ||||| |||||||   |||||||||||| |||| |    
T  450221 cagaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcct 450122  T
Q  243 aaacaaatgaatccttacag 262  Q
    ||||| || ||||| |||||    
T  450121 aaacacatcaatccatacag 450102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 3695660 - 3695720
Alignment:
Q  107 aaaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 167  Q
    ||||||| |||||||||||||||||| | |||||||| ||||||   |||||||| |||||    
T  3695660 aaaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaaca 3695720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 44688929 - 44688820
Alignment:
Q  109 aagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttta 208  Q
    ||||| |||||||||||||||||||  |||||||| |||||||  | |||||| ||| | |||  ||| ||||||||||   |||  ||||||||| |||    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  209 acttcaccca 218  Q
    |||| |||||    
T  44688829 actttaccca 44688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University