View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_high_3 (Length: 760)
Name: NF20262_high_3
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_3 |
 | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 195 - 743
Target Start/End: Complemental strand, 2960160 - 2959613
Alignment:
| Q |
195 |
tgattcaattccttgcaaaccnnnnnnnncataaaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcaga |
294 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
2960160 |
tgattcaattccttgcaaaccttttttttcataaaaattaat-aagtccgccaaaaaggacgggtttatgattattagattcaattgtataatagtcaga |
2960062 |
T |
|
| Q |
295 |
aatgatttaggtagtgtgagattgaaagaaataggattcaagatttatgttgaatacataacattgaagcaataacatatcatcaaaaacattagtaccg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2960061 |
aatgatttaggtagtgtgagattgaaagaaataggatccaagatttatgttgaatacataacattgaagcaataacatatcatcaaaaacattagtaccg |
2959962 |
T |
|
| Q |
395 |
tagtgataagagttgtgaattgaaaacatgtggtacgtggttcgatcgtatgttgtttaaagttgaggttactaagggtcatttgaagaacgaatggaga |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2959961 |
tagtgataagagttgtgaattgaaaacatgtggtacgtggttcgatcgtatgttgtttaaagttgaggttactaagggtcatttgaagaacaaatggaga |
2959862 |
T |
|
| Q |
495 |
aattacacgttaagaaggctacggatcatgttagataaataattcataacgttcacaatattaaagtagctgtaatttgaatatttatannnnnnnagta |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
2959861 |
aattacacgttaagaaggctacggatcatgttaaataaataattcataacgttcacaatattaaattagctgtaatttgaatatttatatttttttagta |
2959762 |
T |
|
| Q |
595 |
actttaaagtttggtggattattgattaaattgttacattgcagatgtgcaacgaagaggaaaaagctggctacaacaatgctttaatttaactaaatta |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2959761 |
actttaaagtttggtggattattgattaaattgttacattgcagatgtgcaacgaagaggaaaaagctggctacaacaatgctttaatttaactaaatta |
2959662 |
T |
|
| Q |
695 |
ttaaatgatgagaaatccattagtggtgacaacttcttcacctatacat |
743 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2959661 |
ttaaatgatgagaaatccattagtggtgacaacttcttcacctatacat |
2959613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 503 - 661
Target Start/End: Complemental strand, 2955606 - 2955445
Alignment:
| Q |
503 |
gttaagaaggctacggat--catgttag-ataaataattcataacgttcacaatattaaagtagctgtaatttgaatatttatannnnnnnagtaacttt |
599 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
2955606 |
gttaagaaggctacggatgatatgttggaataaacaattcataacgttcacactattaaagttgctgtaatttgaatatttttatttttttagtaacttt |
2955507 |
T |
|
| Q |
600 |
aaagtttggtggattattgattaaattgttacattgcagatgtgcaacgaagaggaaaaagc |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2955506 |
aaagtttggtggattattgattaaattgttacattgcagatgtgcaacgaaaaggaagaagc |
2955445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 3622050 - 3621936
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgttattatgggtacctgattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| | ||||| |||||| || |||||||||||||||||||||| || |
|
|
| T |
3622050 |
tttaggattgcatatctattttagaagcaagaatatttcaataaaaatgttagtgatctagtgataaaagctctaaggtgttattatgggtacctggttt |
3621951 |
T |
|
| Q |
201 |
aattccttgcaaacc |
215 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3621950 |
gtttccttgcaaacc |
3621936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 8564732 - 8564870
Alignment:
| Q |
228 |
aaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaagaaata |
327 |
Q |
| |
|
|||||| |||| | ||| |||||||| | |||||||| ||||||| |||||||| || ||||| |||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
8564732 |
aaaatttattaggcccgtcaaaaagggcagggttatggttattaggttcaattgcatgatggtgagaaatgatttagggattgtgacattgaaagaaata |
8564831 |
T |
|
| Q |
328 |
ggattcaagatttatgttgaatacataacattgaagcaa |
366 |
Q |
| |
|
||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
8564832 |
ggacccaagatttgcattgaatacgtaacattgaagcaa |
8564870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 313 - 441
Target Start/End: Original strand, 10041364 - 10041492
Alignment:
| Q |
313 |
agattgaaagaaataggattcaagatttatgttgaatacataacattgaagcaataacatatcatcaaaaacattagtaccgtagtgataagagttgtga |
412 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||||||| |||||||||||||||| |||| |||| ||||||| |||| | | ||| ||| |||||||| |
|
|
| T |
10041364 |
agattgaaagaaataggactcaatatttgtgttgaatagataacattgaagcaatcacatgtcattaaaaacactagtgtcctggtggtaacagttgtga |
10041463 |
T |
|
| Q |
413 |
attgaaaacatgtggtacgtggttcgatc |
441 |
Q |
| |
|
|||| || ||| ||||| ||||| |||| |
|
|
| T |
10041464 |
attggaagcataaggtacctggtttgatc |
10041492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 232 - 441
Target Start/End: Complemental strand, 23842633 - 23842424
Alignment:
| Q |
232 |
ttaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaagaaataggat |
331 |
Q |
| |
|
||||||| || |||||||| || |||||||||||||| || |||||||| || ||||| ||||| |||||||| | | |||||||||||||||||||| |
|
|
| T |
23842633 |
ttaattaggtacgccaaaaggggtggggttatgattatcaggttcaattgcatgatggtgagaaaagatttagggattctgagattgaaagaaataggac |
23842534 |
T |
|
| Q |
332 |
tcaagatttatgttgaatacataacattgaagcaataacatatcatcaaaaacattagtaccgtagtgataagagttgtgaattgaaaacatgtggtacg |
431 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||| |||||| ||| || | | | |||||||||||||||| || ||||||||| |
|
|
| T |
23842533 |
ccaagatttgtgttgaatacataacattgaagcaatcacatgtcatctgaaacatcagtgccctcggggtaagagttgtgaattggaagtatgtggtacc |
23842434 |
T |
|
| Q |
432 |
tggttcgatc |
441 |
Q |
| |
|
|||||||||| |
|
|
| T |
23842433 |
tggttcgatc |
23842424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 44164710 - 44164619
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgttattatgggta |
192 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||| || |||||||| ||||||||| |
|
|
| T |
44164710 |
tttaggattacatatccattttagaagcaacaatttttcaataaaaatgttagtggtctagtggtaaaagctctaaggtgttgttatgggta |
44164619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 41061601 - 41061713
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgttattatgggtacctgattc |
200 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||| ||||||||||||| |||||||| |||| ||||||| || | ||||| ||||||||||| | ||| |
|
|
| T |
41061601 |
tttaggattgcatatctattttataaacaaaaatatttcaataaaaatgttagtggtctagttgtaaaagctcccatgtgttgttatgggtacccggttc |
41061700 |
T |
|
| Q |
201 |
aattccttgcaaa |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41061701 |
cattccttgcaaa |
41061713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 41061758 - 41061810
Alignment:
| Q |
35 |
ggattaaggttaatcaggcttgattggagactgtctaaaatttatatatatta |
87 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
41061758 |
ggattagggttaattagggttgattggagactatctaacatttatatatatta |
41061810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 8207727 - 8207835
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgttattatgggtacctgattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
8207727 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtctagtggtaaaagctcaaaggtgtt------ggtacctaattc |
8207820 |
T |
|
| Q |
201 |
aattccttgcaaacc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8207821 |
aattccttgcaaacc |
8207835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 224 - 382
Target Start/End: Complemental strand, 10928089 - 10927932
Alignment:
| Q |
224 |
cataaaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaaga |
323 |
Q |
| |
|
||||||||||||||| |||||| ||||| || ||| ||||| ||||||| |||||||| ||||||| |||||||||||||| | ||| ||||||||||| |
|
|
| T |
10928089 |
cataaaaattaattaggtccgcaaaaaatgatggg-ttatggttattaggttcaattgcgtaatggtgagaaatgatttagggattgtaagattgaaaga |
10927991 |
T |
|
| Q |
324 |
aataggattcaagatttatgttgaatacataacattgaagcaataacatatcatcaaaa |
382 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
10927990 |
aataggacccaagatttgtgttgaatacataacattgaagcaaccacatgtcatcaaaa |
10927932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 224 - 412
Target Start/End: Original strand, 40140392 - 40140579
Alignment:
| Q |
224 |
cataaaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaaga |
323 |
Q |
| |
|
||||||||||||||| | || ||||||||| ||| |||||| || |||| ||||||||||| |||| |||||||||||||| | ||||||||| ||||| |
|
|
| T |
40140392 |
cataaaaattaattaggcccaccaaaaagggcggagttatggttgttaggttcaattgtatgatggcgagaaatgatttagggattgtgagatt-aaaga |
40140490 |
T |
|
| Q |
324 |
aataggattcaagatttatgttgaatacataacattgaagcaataacatatcatcaaaaacattagtaccgtagtgataagagttgtga |
412 |
Q |
| |
|
|||| || ||| |||| |||||||||||||||||||||| ||| |||| ||||||||||||||||| || | ||| ||||||||||| |
|
|
| T |
40140491 |
aataagacacaaaatttgtgttgaatacataacattgaaggaatcacatgtcatcaaaaacattagtgccctggtggcaagagttgtga |
40140579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 8207873 - 8207927
Alignment:
| Q |
31 |
ggcgggattaaggttaatcaggcttgattggagactgtctaaaatttatatatat |
85 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
8207873 |
ggcgggattagggttaatcagggttgattggagattgtctaaaatttatatatat |
8207927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 11502481 - 11502399
Alignment:
| Q |
100 |
atttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgtt |
182 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || |||||||||| | ||||| |||||||||| | |||||| |||| |
|
|
| T |
11502481 |
atttaggatttcatatctattttagaagcaacaatattccaataaaaatgatggtggtctagtggtaaatgctcaaagatgtt |
11502399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 6095860 - 6095804
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggt |
157 |
Q |
| |
|
||||| ||||||| |||| ||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
6095860 |
tttagaattgcatgtctaattttgaagcaacaatatttcaataaaaatgttagtggt |
6095804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 42935681 - 42935573
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgttattatgggtacctgattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
42935681 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatgttagtggtctagtggtaaaagctcaaaggtgtt------ggtacctaattc |
42935588 |
T |
|
| Q |
201 |
aattccttgcaaacc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42935587 |
aattccttgcaaacc |
42935573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 8194165 - 8194278
Alignment:
| Q |
228 |
aaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaagaaata |
327 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| ||||| |||||| |||||||| | ||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
8194165 |
aaaattaattatgtctgccaaaaagggagggattatggttattatgttcaattgcacgatggtgagaaatgatttaggaattgtgagattgaaagaaata |
8194264 |
T |
|
| Q |
328 |
ggattcaagattta |
341 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
8194265 |
ggacccaagattta |
8194278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 42935535 - 42935479
Alignment:
| Q |
31 |
ggcgggattaaggttaatcaggcttgattggagactgtctaaaatttatatatatta |
87 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
42935535 |
ggcgggattagggttaatcagggttgattggagaatgtctaaaatttatatatatta |
42935479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 9711861 - 9711788
Alignment:
| Q |
118 |
attttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgttattatgggt |
191 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| |||||||| || ||||||||| || |||||||| |||||||| |
|
|
| T |
9711861 |
attttagaagcagcaatatttcaataaaaatgttagtggtctaatggtaaaagctctaaggtgttgttatgggt |
9711788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 22209496 - 22209427
Alignment:
| Q |
100 |
atttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaa |
169 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| || ||||||||||||| |||||||| || |||||||| |
|
|
| T |
22209496 |
atttaggattccatatccattttagaagcaaccatatttcaataaaaatgttagtggtctattggtaaaa |
22209427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 9711723 - 9711671
Alignment:
| Q |
31 |
ggcgggattaaggttaatcaggcttgattggagactgtctaaaatttatatata |
84 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
9711723 |
ggcgggattagggttaatcagg-ttgattggagactatctaacatttatatata |
9711671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 10484575 - 10484460
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaagg-tgttattatgggtacctgatt |
199 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||||||| || |||| ||||||||||||||||| || |
|
|
| T |
10484575 |
tttaggattgcatatatattttagaagcaacaatatttcaataaaaatgttagtggtctagtggtaaaagctctaaggttgttattatgggtacctagtt |
10484476 |
T |
|
| Q |
200 |
caattccttgcaaacc |
215 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10484475 |
tgattccttgcaaacc |
10484460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 258 - 413
Target Start/End: Complemental strand, 11927424 - 11927270
Alignment:
| Q |
258 |
ggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaagaaataggattcaagatttatgttgaatacataaca |
357 |
Q |
| |
|
||||||| ||||||| |||||||| || ||||| |||||||||||||| | ||||| |||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
11927424 |
ggttatggttattaggttcaattgcatgatggtgagaaatgatttagggattgtgacattgaaagaaataggacccaagatttacgttgaatacgtaaca |
11927325 |
T |
|
| Q |
358 |
ttgaagcaataacatatcatcaaaaacattagtaccgtagtgataagagttgtgaa |
413 |
Q |
| |
|
||||||||| | || ||||||||||||| ||| | || || ||||||||||||| |
|
|
| T |
11927324 |
ttgaagcaa-catatgtcatcaaaaacatcagtgcactaatggtaagagttgtgaa |
11927270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 224 - 441
Target Start/End: Complemental strand, 2129382 - 2129172
Alignment:
| Q |
224 |
cataaaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaaga |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||||| |||||||| || ||||| |||||| ||||||| | ||| ||||||||||| |
|
|
| T |
2129382 |
cataaaaattaattgggtccgccaaaaagggttgggttatggttattaggttcaattgcatgatggtgagaaataatttagggattgtaagattgaaaga |
2129283 |
T |
|
| Q |
324 |
aataggattcaagatttatgttgaatacataacattgaagcaataacatatcatcaaaaacattagtaccgtagtgataagagttgtgaattgaaaacat |
423 |
Q |
| |
|
|| | || |||||||| |||| ||||||||||||||| |||| |||| |||| ||| | | || | ||| |||||||||||||||| || || |
|
|
| T |
2129282 |
aacatgacccaagatttttgtt-------taacattgaagcaatcacatgtcatgaaaatcatcacttccctggtggtaagagttgtgaattggaagtat |
2129190 |
T |
|
| Q |
424 |
gtggtacgtggttcgatc |
441 |
Q |
| |
|
|| |||| ||||| |||| |
|
|
| T |
2129189 |
gtagtacctggtttgatc |
2129172 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 25164808 - 25164694
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgttattatgggtacctgattc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||| | ||||||||| || ||||| || |||| |||||||||| |
|
|
| T |
25164808 |
tttaggattgcatatccattttagaagcgacaatatttcaataaaaatgctagtggtctgatggtaaaagctcgaaggtattgttatttgtacctgattt |
25164709 |
T |
|
| Q |
201 |
aattccttgcaaacc |
215 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
25164708 |
gattccctgcaaacc |
25164694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 15374818 - 15374857
Alignment:
| Q |
224 |
cataaaaattaattaagtccgccaaaaaggacggggttat |
263 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
15374818 |
cataaaaattaattaggtccgccaaaaagggcggggttat |
15374857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 19251652 - 19251702
Alignment:
| Q |
34 |
gggattaaggttaatcaggcttgattggagactgtctaaaatttatatata |
84 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
19251652 |
gggattagggttaattaggattgattggagactatctaacatttatatata |
19251702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 248 - 429
Target Start/End: Complemental strand, 7778692 - 7778512
Alignment:
| Q |
248 |
aaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaagaaataggattcaagatttatgttga |
347 |
Q |
| |
|
|||||| | |||||||| ||||||| |||||||| || | ||| |||||||||||||| | ||||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
7778692 |
aaaagggcagggttatggttattaggttcaattgcatgacggtgagaaatgatttagggattgtgacattgaaagaaataggacccaagatttgcgttga |
7778593 |
T |
|
| Q |
348 |
atacataacattgaagcaataacatatcatcaaaaacattagtaccgtagtgataagagttgtgaattgaaaacatgtggta |
429 |
Q |
| |
|
|||| |||||||||||||| | || ||||||||||||| ||| | || || |||||||||||||||| || | ||||||| |
|
|
| T |
7778592 |
atacgtaacattgaagcaa-catatgtcatcaaaaacatcagtgcactaatggtaagagttgtgaattggaatcttgtggta |
7778512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 5586094 - 5586209
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaa---agttcaaaggtgttattatgggtacctga |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| |||||||| || ||||||| || || |||||||||||| |||||| |
|
|
| T |
5586094 |
tttaggattgcatatctattttagaagcaacaatatttcaacaaaaatgttagtggtctaatggtaaatttagctctaaggtgttattaccggtaccctg |
5586193 |
T |
|
| Q |
198 |
ttcaattccttgcaaa |
213 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
5586194 |
ttcaatttcttgcaaa |
5586209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 5586258 - 5586311
Alignment:
| Q |
34 |
gggattaaggttaatcaggcttgattggagactgtctaaaatttatatatatta |
87 |
Q |
| |
|
||||||| ||||||| | | ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5586258 |
gggattagggttaattaaggttgattggagactatctaacatttatatatatta |
5586311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 294 - 424
Target Start/End: Original strand, 10024564 - 10024694
Alignment:
| Q |
294 |
aaatgatttaggtagtgtgagattgaaagaaataggattcaagatttatgttgaatacataacattgaagcaataacatatcatcaaaaacattagtacc |
393 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||| ||||||||||||| ||| | |
|
|
| T |
10024564 |
aaatgatttagggataatgagattgaaagaaataggacccaagatttgtgttgaatagataacattgaagcaaacacatgtcatcaaaaacatcagtgac |
10024663 |
T |
|
| Q |
394 |
gtagtgataagagttgtgaattgaaaacatg |
424 |
Q |
| |
|
| ||| |||||||| |||||||||| |||| |
|
|
| T |
10024664 |
ctggtggtaagagttttgaattgaaagcatg |
10024694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 8248 - 8135
Alignment:
| Q |
228 |
aaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaagaaata |
327 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| ||||| |||||| |||||||| | ||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
8248 |
aaaattaattatgtctgccaaaaagggagggattatggttattatgttcaattgcacgatggtgagaaatgatttaggaattgtgagattgaaagaaata |
8149 |
T |
|
| Q |
328 |
ggattcaagattta |
341 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
8148 |
ggacccaagattta |
8135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 18161 - 18048
Alignment:
| Q |
228 |
aaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaagaaata |
327 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| ||||| |||||| |||||||| | ||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
18161 |
aaaattaattatgtctgccaaaaagggagggattatggttattatgttcaattgcacgatggtgagaaatgatttaggaattgtgagattgaaagaaata |
18062 |
T |
|
| Q |
328 |
ggattcaagattta |
341 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
18061 |
ggacccaagattta |
18048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 20821 - 20934
Alignment:
| Q |
228 |
aaaattaattaagtccgccaaaaaggacggggttatgattattagattcaattgtataatggtcagaaatgatttaggtagtgtgagattgaaagaaata |
327 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| ||||| |||||| |||||||| | ||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
20821 |
aaaattaattatgtctgccaaaaagggagggattatggttattatgttcaattgcacgatggtgagaaatgatttaggaattgtgagattgaaagaaata |
20920 |
T |
|
| Q |
328 |
ggattcaagattta |
341 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
20921 |
ggacccaagattta |
20934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 44298 - 44242
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
44298 |
tttaggattgcatatctattttagaagcaacaatatttcaataaaaatgttagtggt |
44242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 33813332 - 33813443
Alignment:
| Q |
101 |
tttaggattgcatatctattttagaagcaacaatctttcaataaaaatattagtggtgtagtggtaaaagttcaaaggtgttattatgggtacctgattc |
200 |
Q |
| |
|
||||||||| |||||| ||||||||||||| ||| ||||||||||||| ||| |||| ||||||||||| || |||| ||| ||||||||| ||||| |
|
|
| T |
33813332 |
tttaggattacatatccattttagaagcaataatttttcaataaaaatgttattggtctagtggtaaaaactctaagg-gttgttatgggtagacgattc |
33813430 |
T |
|
| Q |
201 |
aattccttgcaaa |
213 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
33813431 |
aattcctagcaaa |
33813443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 33813483 - 33813535
Alignment:
| Q |
31 |
ggcgggattaaggttaatcaggcttgattggagactgtctaaaatttatatata |
84 |
Q |
| |
|
|||||||||| |||||| |||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
33813483 |
ggcgggattagggttaaacagg-ttgattggggactgtctaacatttatatata |
33813535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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