View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_33 (Length: 461)
Name: NF20262_high_33
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 18892539 - 18892989
Alignment:
| Q |
16 |
atgaatgaaaagcctattagggactttgtcttgctatttctaaaactactgttttgaagttgggtcttagaattgatgaggaggagaagattggtgggga |
115 |
Q |
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| T |
18892539 |
atgaatgaaaagcctattagggactttgtcttgctatttctaaaactactgatttgaagttgggtcttagaattgatgaggaggagaagattggtgggga |
18892638 |
T |
|
| Q |
116 |
ttgtgttgtgactccaaaggaaaacgatggtgataaggag----------------------ctacttatttttaccctgaatagttaagtgtgcttgaa |
193 |
Q |
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| T |
18892639 |
ttgtgttgtgactccaaaggaaaacgatggtgataaggagagcaagatagattctaatgtgtctacttatttttaccctgaatagttaagcgtgcttgaa |
18892738 |
T |
|
| Q |
194 |
tttagttttgtatgtgatgtctatattatgatgctcatcaatgaaaatgaaaaattgtcagccctcttaacattgattaataacaaatatgctagttcat |
293 |
Q |
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| T |
18892739 |
tttagttttgtatgtgatgtctatattatgatgctcatcaatgaaaataaaaaattgtcagccctcttaacattgattaataacaaatatgctagttcat |
18892838 |
T |
|
| Q |
294 |
tgccaacttatacctaaaagttatatattttagattggttaattcattgtatcaagttttgtgtgattatttagttagtaattaaattgaaattttaaca |
393 |
Q |
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| T |
18892839 |
tgccaacttatacctaaaagttatatattttagattggttaattcattgtatcaagttttgtgtgattatttagttagtaattaaattgaaattttaaca |
18892938 |
T |
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| Q |
394 |
catgtcatggtttgctgccacacgtggagacatcttaatattagcaattgg |
444 |
Q |
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| T |
18892939 |
catgtcatagtttgctgccacacgtggagacatcttaatattagcatttgg |
18892989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 49264443 - 49264696
Alignment:
| Q |
16 |
atgaatgaaaagcctattagggactttgtcttgctatttctaaa---actactgttttgaagttgggtcttagaattgatgaggaggagaagattggtgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49264443 |
atgaatgaaaagcctattagggactttgtcttgctatttctaaattaactactgttttgaagttgggtcttagaattgatgaggag---aagattggtgg |
49264539 |
T |
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| Q |
113 |
ggattgtgttg---tgactccaaaggaaaacgatggtgataag--gagc--------------------tacttatttttaccctgaatagttaagtgtg |
187 |
Q |
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| T |
49264540 |
ggattgtgttggtatgactccaaaggaaaacgatggtgataaggagagcaagatagattctaatgtgtttacttatttttatcctgaatagttaagagtg |
49264639 |
T |
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| Q |
188 |
cttgaatttagttttgtatgtgatgtctatattatgatgctcatcaatgaaaatgaa |
244 |
Q |
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| T |
49264640 |
tttgaatttagttttgtatgtgatgtctatattatgatgctcatcaatgaaaatgaa |
49264696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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