View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_high_4 (Length: 749)
Name: NF20262_high_4
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 717; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 13 - 733
Target Start/End: Original strand, 29332863 - 29333583
Alignment:
| Q |
13 |
catcatcatccaacgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29332863 |
catcatcatccaacgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaa |
29332962 |
T |
|
| Q |
113 |
cagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcccgataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29332963 |
cagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcccgataa |
29333062 |
T |
|
| Q |
213 |
gtccattccaagatactcccaaacacaagatcaaaattcccttgattcaaccaaaatgctctctcattcgcaacatccaccggtattaccgttaacaaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333063 |
gtccattccaagatactcccaaacacaagatcaaaattcccttgattcaaccaaaatgctctctcattcgcaacatccaccggtattaccgttaacaaca |
29333162 |
T |
|
| Q |
313 |
aaagccctttcttattttccgattgcacttcactggaaaaacaagcgagaacatactcaagaagctccacccaaccaccaagagaacaccggtaaaacct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333163 |
aaagccctttcttattttccgattgcacttcactggaaaaacaagcgagaacatactcaagaagctccacccaaccaccaagagaacaccggtaaaacct |
29333262 |
T |
|
| Q |
413 |
atcagcaagtaaaccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaatgaagaagaggattcttcagttcgagtaag |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333263 |
atcagcaagtaaaccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaatgaagaagaggattcttcagttcgagtaag |
29333362 |
T |
|
| Q |
513 |
ataatagaattgaaaggaccgttaattccttcgggaagaacttgaagaagatgattaacggtttcgattctcgtttgaatcggaggttgaaattctagaa |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333363 |
ataatagaattgaaaggaccgttaattccttcgggaagaacttgaagaagatgattaacggtttcgattctcgtttgaatcggaggttgaaattctagaa |
29333462 |
T |
|
| Q |
613 |
gctttgcaagtttcaaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgat |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333463 |
gctttgcaagtttcaaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgat |
29333562 |
T |
|
| Q |
713 |
tacttcttgaagcaatgaaag |
733 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
29333563 |
tacttcttgaagcgatgaaag |
29333583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 29321724 - 29321862
Alignment:
| Q |
68 |
ctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaa |
167 |
Q |
| |
|
||||||||| ||||||| || ||||||| |||||||| ||||||| |||| |||| |||| |||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
29321724 |
ctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctgaagatccttcgacaataacatcaacgaa |
29321823 |
T |
|
| Q |
168 |
attgatgcattgtatgccaatcccttcaattccttatcc |
206 |
Q |
| |
|
| ||||||| || |||||||| | |||||||||| |||| |
|
|
| T |
29321824 |
agtgatgcagtgaatgccaatgctttcaattcctgatcc |
29321862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 29304486 - 29304676
Alignment:
| Q |
16 |
catcatccaacgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacag |
115 |
Q |
| |
|
|||||||||| ||||||| || | |||||| |||| ||||| ||||| |||||||||||| || |||| |||||| ||| |||| |||||| |||| || |
|
|
| T |
29304486 |
catcatccaatttaactaattcccacaaacgattaatcctattcaccagaacctcttcttctccgtgttgatcgatgatattcaataaattccgcaagag |
29304585 |
T |
|
| Q |
116 |
aaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcc |
206 |
Q |
| |
|
| ||| | |||| || || || || || | |||||||| ||||| |||||||||| || |||||||| | |||||||||||| |||| |
|
|
| T |
29304586 |
agaattggatacttcatttttcagaaaatcatttgacaataatatcaatgaaattgatgaatcgtatgccagtgccttcaattcctgatcc |
29304676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 29322059 - 29322142
Alignment:
| Q |
400 |
accggtaaaacctatcagcaagtaaaccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaat |
483 |
Q |
| |
|
||||||| ||||| ||||| | |||||| ||| ||||||||||||| |||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
29322059 |
accggtacaacctgtcagcgaataaacccatcatttcgcatagcgaaggaaacagaatttcttcagattctaccttgagcgaat |
29322142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 669
Target Start/End: Original strand, 29296005 - 29296069
Alignment:
| Q |
605 |
ttctagaagctttgcaagtttcaaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaa |
669 |
Q |
| |
|
||||||||| || || || || |||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
29296005 |
ttctagaagtttcgcgagcttgaaagcgaatgcgttagggtaatgatgagcgagggatttgaaaa |
29296069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University