View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_40 (Length: 441)
Name: NF20262_high_40
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 9866327 - 9866759
Alignment:
| Q |
1 |
ttaaattcattatgtgccccttatgttgttgaagtgcagtggttagtactgggacatagtttaggtgtgtgggttggacatggatcccatcacacctata |
100 |
Q |
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| T |
9866327 |
ttaaattcattatgtgccccttatgttgttgaagtgcagtggttagtactgggacatagtttaggtgtgtgggttggacatggatcccatgacacctata |
9866426 |
T |
|
| Q |
101 |
ttttgttttcgtttatatgtgtatgtgtcaacaaaataagttagttcattatatgatatcatgttaggttttcaaaatgttctttaaacccagcaaacaa |
200 |
Q |
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| T |
9866427 |
ttctgtttttgtt-atatgtgtatgtgtcaacaaaaaaagttagttcattatatgatattatgttaggttttcaaaatgttctt-aaacccaacaaacaa |
9866524 |
T |
|
| Q |
201 |
gtttagaaaacatgagaaaaactttgcttagtccacataacaaaaacacggacagacagacagatagatagacggatagatagg----gattactaacct |
296 |
Q |
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| T |
9866525 |
gtttagaaaacatgagaaaaaatttgctcagtccacataacaaaaacacgaacagacagacagatagacagacagatagatagatagagattactaacct |
9866624 |
T |
|
| Q |
297 |
cagatactgaaatggtaggaagaagagtactaagatgaagatatatacgttgaagaagaccagtgccacaattgcaagctctttcactaccttctgtatt |
396 |
Q |
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| T |
9866625 |
cggatactgaaatggtaggaagaagagtactaagatgaagatatatacgttgaagaagaccagtgccacaattgcaagctctttcactaccttctgtatt |
9866724 |
T |
|
| Q |
397 |
tcgcattctttcttcatggcaattctcaacctttg |
431 |
Q |
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| T |
9866725 |
tcgcattctttcttcatggcaattctcaacctttg |
9866759 |
T |
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