View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_41 (Length: 440)
Name: NF20262_high_41
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 213 - 425
Target Start/End: Complemental strand, 27482746 - 27482534
Alignment:
| Q |
213 |
caattgattaaacacgataaatttattagggtaaccataattaatcaaaataaaatagctatgccatttaaggatttgaggtatattacatttataaaga |
312 |
Q |
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| T |
27482746 |
caattgattaaacacgataaatttattagggtaaccataattaatcaaaataaaatagctatgccatttaaggatttgaggtatatcacatttataaaga |
27482647 |
T |
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| Q |
313 |
attaacattatgaatttgttgtattaaataaagaaataataatgaaaataatgtgaatacctccaaagacaatggcaatgtgacagggagagatggccgg |
412 |
Q |
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| T |
27482646 |
attaacattatgaatttgttgtattaaataaagaaataataatgaaaataatgtgaatacctccaaagacaatggcaatgtgacagggagagatgaccag |
27482547 |
T |
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| Q |
413 |
gggatggggatga |
425 |
Q |
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| T |
27482546 |
gggatggggatga |
27482534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 27482938 - 27482854
Alignment:
| Q |
19 |
acaaatgtagaatgaagaaaaggtcctaacctttaaatttttgctacgttttagggtaaatcaacaaaacaacattaccttcgtc |
103 |
Q |
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| T |
27482938 |
acaaatgtacaatgaagaaaaggtcctaacctttaaatttttgctacgttttagggtaaatcaacaaaacaacattaccttcgtc |
27482854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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